du2html 0.0.1

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du2html

du2html is a tool to generate human-readable html report from du (disk usage in linux and macos) result.

Installation

• from pypi

pip install du2html

• from github

pip install https://github.com/danielmsk/du2html/raw/main/dist/du2html-0.0.1-py3-none-any.whl

Dependency

This du2html requires the following packages:

• rich
• pyreadr
• prettytable
• pandas
• pytabix

Options

optional arguments:
  -h, --help            show this help message and exit

  -v, --version         show program's version number and exit

  -i, --in              search. terms (ex: age smoking)
                        -s age
                        -s age smoking
                        -s 'smok*'
                        -s '*age' 'smok*'

  -l, --logic           logical operator for multiple terms [or(default), and]
                        -s '*age' 'smok*' -l and
                        -s age 'smok*' -l or

  -o, --out             title of output file
                        -o searchresult_20220322

  -t, --outtype         output type [console(default), csv, udi]
                        -t csv
                        -t console csv
                        -t udi
                        -t console udi

  -p, --path            directory path for data files (.html, .Rdata) (default: /data2/UKbiobank/ukb_phenotype)
                        -p /other/path/for/ukb/html/.

  -u, --udilist         FileID and UDI list for saving data from tcf files
                        -u ukb39003 3536-0.0 3536-1.0 3536-2.0

  -d, --savedata        save data from .Rdata [csv, rdata]
                        -d csv
                        -d rdata
                        -d csv rdata

  -i, --index
                        index tab file and make tcf file (ex. ukb39003.tab)

Usage

Make HTML report

du2html -i du_result.txt -t 32t

Print standard output

du2html -p ./duresults -o du_result.html

Version History

• 0.1.0 (2022-04-12)
  • first released.