emdfile 0.0.1

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emdfile

EMD (Electron Microscopy Dataset) 1.0 is an HDF5 based file format which is designed to carry arbitrary data and metadata. An overview of the file specification can be found here.

emdfile is a Python package defining write and read functions and a set of classes which together interface between EMD 1.0 files and Python runtime objects. The classes are designed to quickly build, save to, and read from filetree-like representations of data and metadata.

Installation

Run

pip install emdfile

Or, to install from source code, clone this repository and from the distribution level directory (i.e. where pyproject.toml lives) run

pip install .

Examples and syntax

For an example, see tutorials/emd_intro_example.ipynb.

For an walkthrough of the syntax, see tutorials/emd_package_walkthrough.ipynb.

For an example of a downstream Python package with it's IO build on emdfile, see tutorials/test_custom_class.py and tutorials/sample_custom_class_module.