Python package providing pipelines for electrophysiological (EEG/MEG) data within nipype framework.
Project description
.. _readme:
.. image:: https://travis-ci.org/neuropycon/ephypype.svg?branch=master :target: https://travis-ci.org/neuropycon/ephypype
.. image:: https://codecov.io/gh/neuropycon/ephypype/branch/master/graph/badge.svg :target: https://codecov.io/gh/neuropycon/ephypype
.. image:: https://circleci.com/gh/neuropycon/ephypype.svg?style=svg :target: https://circleci.com/gh/neuropycon/ephypype
.. image:: https://zenodo.org/badge/92522975.svg :target: https://zenodo.org/badge/latestdoi/92522975
README
Description
Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype
Documentation
https://neuropycon.github.io/ephypype
Installation
Requirements
ephypype works with python3
The dependencies (mne, nipype) are automatically installed during ephypype installation (see :ref:ephy_install
).
We also recommend to install MNE python by following the installation instructions <http://martinos.org/mne/dev/install_mne_python.html#check-your-installation>
_
.. _ephy_install:
Install ephypype
To install ephypype, use the following command:
.. code-block:: bash
$ pip install ephypype
or alternatively, you can download from github the last version and install it:
.. code-block:: bash
$ git clone https://github.com/neuropycon/ephypype.git
$ cd ephypype
$ python setup.py develop
.. comment: .. _conda_install:
Install dependencies with conda
+++++++++++++++++++++++++++++++
.. code-block:: bash
conda install pandas
conda install matplotlib
Software
Freesurfer ++++++++++
- Download Freesurfer software:
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
- Follow the Installation instructions
https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall
.. comment: MNE +++
1. Download MNE software:
http://martinos.org/mne/dev/install_mne_c.html
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file ephypype-0.5.tar.gz
.
File metadata
- Download URL: ephypype-0.5.tar.gz
- Upload date:
- Size: 122.6 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.4.2 requests/2.27.1 setuptools/45.2.0 requests-toolbelt/0.8.0 tqdm/4.64.0 CPython/3.8.10
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | a57c9987b61c46488eb19a0e941793ea90a41306b50206ffacdc39e7f3ce7b3a |
|
MD5 | 4ed348c2aaf0adeb164284877f2a1f40 |
|
BLAKE2b-256 | 2b547b20f51ab744deeeecc7cfebc08de7e4ff4430b2c70abb7f2e28272cea27 |
File details
Details for the file ephypype-0.5-py3-none-any.whl
.
File metadata
- Download URL: ephypype-0.5-py3-none-any.whl
- Upload date:
- Size: 144.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.4.2 requests/2.27.1 setuptools/45.2.0 requests-toolbelt/0.8.0 tqdm/4.64.0 CPython/3.8.10
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6aa2f8ec6caa76d50d17be4549cf881a9d5e68816c1c3475b2066983870424e2 |
|
MD5 | 75dcf02ace39cea60681a84de7f19a6a |
|
BLAKE2b-256 | 9f92f71d061c513cff556ce3b87db274f6b693bfbac82273bf985b264d2fc8e4 |