.. _readme:

.. image:: https://codecov.io/gh/neuropycon/ephypype/branch/master/graph/badge.svg :target: https://codecov.io/gh/neuropycon/ephypype

.. image:: https://circleci.com/gh/neuropycon/ephypype.svg?style=svg :target: https://circleci.com/gh/neuropycon/ephypype

.. image:: https://zenodo.org/badge/92522975.svg :target: https://zenodo.org/badge/latestdoi/92522975

.. image:: https://badge.fury.io/py/ephypype.svg :target: https://badge.fury.io/py/ephypype

README

Description

Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype

Documentation

https://neuropycon.github.io/ephypype

Installation

Requirements

ephypype works with python3

The dependencies (mne, nipype) are automatically installed during ephypype installation (see :ref:ephy_install).

We also recommend to install MNE python by following the installation instructions <http://martinos.org/mne/dev/install_mne_python.html#check-your-installation>_

.. _ephy_install:

Install ephypype

To install ephypype, use the following command:

.. code-block:: bash

$ pip install ephypype

or alternatively, you can download from github the last version and install it:

.. code-block:: bash

$ git clone https://github.com/neuropycon/ephypype.git
$ cd ephypype
$ python setup.py develop

.. comment: .. _conda_install:

Install dependencies with conda
+++++++++++++++++++++++++++++++

.. code-block:: bash 

    conda install pandas
    conda install matplotlib

Software

Freesurfer ++++++++++

1. Download Freesurfer software:

https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall

2. Follow the Installation instructions

https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall

.. comment: MNE +++

1. Download MNE software:

http://martinos.org/mne/dev/install_mne_c.html