ExTaxsI functions
Library overview
ExTaxsI functions can be used separately from the ExTaxsI tool. In general, there are 6 main functions for the following tasks:
load_configurations() - mandatory before using ExTaxsi functions - setting NCBI API key to allow data query
db_creation() - create FASTA, accession with taxonomy or enriched database
taxonomyID_converter() - convert taxid into organism taxonomy and viceversa
sunburst_plot() - create sunburst plot
scatterplot() - create scatterplot
worldmap_plot() - create worldmap plot
In the [github](https://github.com/qLSLab/ExTaxsI/blob/master/library/functions_installation_and_tutorial.ipynb) notebook installation and tutorials for configuration and usage are provided.
Input files used are available in the examples directory.
For any doubt, please write to g.agostinetto@campus.unimib.it
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