fastpace 0.2.0

FaSTPACE: A Fast and Scalable Tool for Peptide Alignment and Consensus Extraction

FaSTPACE: A Fast and Scalable Tool for Peptide Alignment and Consensus Extraction

FaSTPACE (Fast and Scalable Tool for Peptide Alignment and Consensus Extraction) is a Python package implemented in C programming language.

Table of contents

• Description
• Usage
• Development
• License
• Reference

Description

The core of the algorithm produces a refined global similarity matrix from which these outputs are produced. A global similarity matrix is a probabilistic representation of the similarity of the peptide to all other peptides in the dataset. The method consists of three steps: initiation, refinement and post-processing of the global similarity matrix.

Usage

Install the pachage:

pip install fastpace

examples

Coming soon

Development

If you clone the repository, we recommend that you install it as a development package with:

python setup.py develop

To generate distribution archive from your machine:

python -m build

To distribute binary Python extensions as wheels on Linux:

docker pull quay.io/pypa/manylinux2014_x86_64
docker run --rm -e PLAT=manylinux2014_x86_64 -v `pwd`:/io quay.io/pypa/manylinux2014_x86_64  /io/build-wheels.sh

License

This source code is licensed under the MIT license found in the LICENSE file in the root directory of this source tree.

Reference

If you find the pipeline useful in your research, we ask that you cite our paper:

Coming soon.