fastsig
Fast publication-quality signal heatmaps and boxplots, with a Rust-accelerated implementation of the most commonly used signal-processing primitives.
pip install fastsig
fastsig --help
fastsig pipeline --help # end-to-end BAM/bigWig → heatmap+boxplot
fastsig function --help # gene-set heatmap from GMT
fastsig gene --help # gene-body heatmap from GTF
fastsig gtf-to-bed --help # extract genes/transcripts from GTF.gz
Subcommands
pipeline End-to-end BAM/bigWig → matrix → heatmap + boxplot driver
function Gene-set heatmap + boxplot from one or more GMT/text files
gene Gene-body heatmap + boxplot from a GTF or gene BED
plot-heatmap-box Compute a signal matrix then render heatmap + boxplot
bam-coverage Convert BAM to normalized bigWig/bedGraph coverage
bigwig-compare Combine two bigWigs (log2/ratio/subtract/add/mean) into one
compute-matrix Build per-region signal matrices from bigWigs (.mat.gz)
gtf-to-bed Extract genes or transcripts from GTF(.gz) to BED6
Documentation
Full user guide (Chinese) — installation, every subcommand's parameter table, end-to-end recipes, input format reference, FAQ, and how to build from source:
📖 https://github.com/typekey/deeptools_rust/blob/main/docs/fastsig_usage.md
See the project README for benchmarks, architecture notes, and demo figures.
License
MIT
1 maintainer
Metadata
1 maintainer
Release files for fastsig 0.1.18
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Built distributions (wheels)
| File | Actions Reset | |||
|---|---|---|---|---|
| fastsig-0.1.18-py3-none-win_amd64.whl | Python 3 | none | Windows x86-64 | Details for fastsig-0.1.18-py3-none-win_amd64.whl |
| fastsig-0.1.18-py3-none-manylinux_2_28_x86_64.whl | Python 3 | none | Linux glibc 2.28+ x86-64 | Details for fastsig-0.1.18-py3-none-manylinux_2_28_x86_64.whl |
| fastsig-0.1.18-py3-none-manylinux_2_28_aarch64.whl | Python 3 | none | Linux glibc 2.28+ ARM64 | Details for fastsig-0.1.18-py3-none-manylinux_2_28_aarch64.whl |
| fastsig-0.1.18-py3-none-macosx_11_0_arm64.whl | Python 3 | none | macOS 11.0+ ARM64 | Details for fastsig-0.1.18-py3-none-macosx_11_0_arm64.whl |
| fastsig-0.1.18-py3-none-macosx_10_9_x86_64.whl | Python 3 | none | macOS 10.9+ x86-64 | Details for fastsig-0.1.18-py3-none-macosx_10_9_x86_64.whl |
Total release size: 12.6 MB
Release files / fastsig-0.1.18-py3-none-win_amd64.whl
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