gen3-util 0.0.1

Commons utilities

Gen3 Utilities

Utilities to manage Gen3 schemas, projects and submissions.

Installation

Use

$gen3_util --help

Usage: gen3_util [OPTIONS] COMMAND [ARGS]...

  Gen3 Management Utilities

Options:
  --config TEXT              Path to config file. GEN3_UTIL_CONFIG
  --format [yaml|json|text]  Result format. GEN3_UTIL_FORMAT
  --help                     Show this message and exit.

Commands:
  projects  Manage Gen3 projects.
  meta      Manage meta data.
  files     Manage file buckets.
  config    Configure this utility.

Development Setup

python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
pip install -r requirements-dev.txt
pip install -e . 

Test

• fixtures

tests/fixtures/
└── custom_config
    └── config.yaml  # testing configuration

Distribution

• PyPi

# update pypi

export TWINE_USERNAME=  #  the username to use for authentication to the repository.
export TWINE_PASSWORD=  # the password to use for authentication to the repository.

rm -r dist/
python3  setup.py sdist bdist_wheel
twine upload dist/*