Compute gene trajectories
Project description
Python Gene Trajectory
This package is a Python implementation of GeneTrajectory, which is implemented in R.
Note that, although the implementation is equivalent, it will produce slightly different results to the R implementation
because the signs of eigenvectors may differ and because of the randomness of K-means during the coarse_grain step.
Install
The development version of the package can be installed as
pip install gene-trajectory
The development version of the package can be installed as
pip install git+https://github.com/Klugerlab/GeneTrajectory-python.git
Tutorial
Please follow the Jupyter Notebook tutorials in the folder notebooks.
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