This release is a pre-release and may not be stable for production use.
Genonets
This is the Python package used by the Genonets Server for creating and analyzing genotype networks from raw data.
Installation
Linux and Mac OS
Using pip,
pip install genonets
In case you get a ‘permission’ related error, try the following:
sudo pip install genonets
You can also install Genonets directly from the source package.
python setup.py install
Again, in case you run into permission related errors,
sudo python setup.py install
Windows
Instructions for Windows are basically the same, except in certain cases installation of dependencies fails. If that happens, follow these steps:
- Download the ‘whl’ files for numpy and igraph from http://www.lfd.uci.edu/~gohlke/pythonlibs/. E.g.,
numpy-1.10.2+mkl-cp27-none-win32.whl
python_igraph-0.7.1.post6-cp27-none-win32.whl
pip install python_igraph-0.7.1.post6-cp27-none-win32.whl
pip install numpy-1.10.2+mkl-cp27-none-win32.whl
And finally, pip install genonets
Using Genonets as a command line tool
The best way to get started is to work through ‘genonets_exmpl_simple.py’ available in the ‘genonets/sample’ directory. The following command can be used to view the list of command line arguments:
‘python genonets_exmpl_simple.py -h’
This directory also includes other sample files, each highlighting different features.
The details of the analyses used and the attributes computed can be found on the Learn Genonets page.
1 maintainer
Metadata
1 maintainer
Release files for genonets 1.0.0b3
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| genonets-1.0.0b3.tar.gz | 58.7 kB | Without provenance | Details for genonets-1.0.0b3.tar.gz |
Built distributions (wheels)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| genonets-1.0.0b3-py2.7.egg | Legacy Egg format | - | - | Details for genonets-1.0.0b3-py2.7.egg |
| genonets-1.0.0b3-py2-none-any.whl | Python 2 | none | any | Details for genonets-1.0.0b3-py2-none-any.whl |
Total release size: 241.8 kB
Release files / genonets-1.0.0b3.tar.gz
| Download URL | genonets-1.0.0b3.tar.gz |
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| Size | 58.7 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / genonets-1.0.0b3-py2.7.egg
| Download URL | genonets-1.0.0b3-py2.7.egg |
|---|---|
| Size | 112.8 kB |
| Tags | Egg |
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Release files / genonets-1.0.0b3-py2-none-any.whl
| Download URL | genonets-1.0.0b3-py2-none-any.whl |
|---|---|
| Size | 70.3 kB |
| Tags | Python 2 |
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SHA-256 checksum How to use checksums |
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Security for genonets 1.0.0b3
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