geviewer 0.1.0

A lightweight, Python-based visualization tool for Geant4.

GeViewer

GeViewer is a lightweight, Python-based visualization tool for Geant4. It provides a convenient way to view detector geometries and particle trajectories, with smooth rendering in an interactive window.

Features

• Physics-focused visuals: See color-coded particle trajectories in a 3D-rendered detector

• Intuitive controls: Use your mouse to rotate, zoom, pan, and interact with the geomery

• Customizable viewing: Toggle through different viewing options with simple key commands

• High-quality graphics: Produce publication-quality visuals of detectors and events

• Fast performance: Enjoy smooth, responsive rendering even with large and complex detector geometries

Setup

Dependencies

The following packages are required:

• numpy

• tqdm

• pyvista

Installation

GeViewer can be installed using pip as follows:

pip install geviewer

To uninstall:

pip uninstall geviewer

Usage

Quick start

GeViewer is intended to be used primarily as a command line tool. To run the program, you should have already produced one or more VRML files from Geant4 simulations. See the section below for instructions on what to put in your Geant4 macro. If you already have a VRML file, you can view it using:

geviewer /path/to/file.wrl

This will load the meshes described in /path/to/file.wrl and display them in an interactive window. The viewing perspective can be changed by clicking, dragging, and scrolling in the window, while other functions can be activated using key commands. More specific instructions for use will print in the terminal window when the program is launched.

Instructions for Geant4

To produce Geant4 outputs that can be read by GeViewer, you must tell Geant4 to save the visualization as a VRML file. You can do this by putting the following in your Macro file:

# this line should come BEFORE the /run/beamOn command
/vis/open VRML2FILE

Following this, you can add the geometry, trajectories, and step markers. Any of these can be omitted if they are not needed.

# now ensure that the geometry is displayed
/vis/drawVolume

# add the trajectories
/vis/scene/add/trajectories

# add the step markers
/vis/modeling/trajectories/create/drawByParticleID
/vis/modeling/trajectories/drawByParticleID-0/default/setDrawStepPts true

# ensure that they are not cleared at the end of the event
/vis/scene/endOfEventAction accumulate

There are many other visualization commands that can be added here as well. Consult the Geant4 documentation for more information. This section is also where you can put any other application-specific commands. Next, start the simulation with /run/beamOn followed by the number of primaries to generate. For visualization purposes, you should not be generating more than a handful of events.

# specify the number of events and start the simulation
/run/beamOn 1

Finally, refresh the viewer to ensure that the events generated have been added.

/vis/viewer/flush

By default, the VRML file will be saved as g4_00.wrl in the working directory, but it can easily be renamed from within the macro by issuing a shell command.

/control/shell mv g4_00.wrl /new/path/to/file.wrl

If you are using your local computer, you can even pipe the VRML file directly to GeViewer to have the interactive window open automatically following the simulation.

/control/shell geviewer /new/path/to/file.wrl

Note that this will not work if you are running Geant4 on a remote machine over ssh, as GeViewer cannot be run using X11 forwarding. If that is your use case, you can download the resulting VRML file to open on your local computer, or you can add the -o and -d flags to the command above to save a GeViewer session to disk. This will be discussed more in a later section.

Interacting with the viewer

The following instructions for interacting with the viewer will display when the program is launched:

• Click and drag to rotate the view, shift + click and drag to pan, ctrl + click and drag to roll, and scroll to zoom

• Press c to capture a screenshot of the current view

• Press t to toggle the trajectories on or off

• Press m to toggle the step markers on or off

• Press b to toggle the background on or off

• Press w to toggle between wireframe and solid modes

• Press v to switch to an isometric view

• Press d to set the display window size

• Press i to set the camera viewpoint

• Press p to print the current display settings

• Press h to export the viewer to an HTML file

• Press q to quit the viewer

While the primary interface is with the viewer window, some commands require text entry in the terminal window. Any saving commands will require the user to enter a file path in the terminal. Some of these functions have been specifically designed to provide more precise control of the viewer than can be achieved using the mouse alone.

Saving figures

Producing high-quality figures is a key feature of GeViewer. When creating figures for papers or presentations, it's often important to get a repeatable view to compare multiple geometries or events from the same perspective. Using the p and i commands, you can print your preferred view and later reset the viewpoint to those exact settings. Or, you can use v to go to an isometric view.

Additionally, it's frequently necessary to produce figures of a specific resolution. The d command allows you to specify the exact resolution of the plotting window before capturing the view with the c command.

GeViewer supports saving figures in various file formats. The file format is determined by the extension you provide when entering the filename in the terminal window after pressing c. The supported formats are .png, .svg, .eps, .ps, .pdf, and .tex.

Exporting to HTML

Once a file has been loaded with GeViewer, the interactive session can be saved to an HTML file, allowing for later viewing in a web browser (with some features missing). Saving to HTML requires some additional packages:

• nest-asyncio

• trame

• trame-vuetify

• trame-vtk

These packages can be installed automatically using:

pip install geviewer[extras]

Additional options

The full list of command-line options can be displayed using the --help flag:

$ geviewer --help

usage: geviewer [-h] [-d [DESTINATION]] [-o] [-s] [-w] filenames [filenames ...]

View Geant4 simulation results.

positional arguments:
  filenames             the file or list of files to be displayed

options:
  -h, --help            show this help message and exit
  -d [DESTINATION], --destination [DESTINATION]
                        save the session to this location
  -o, --off-screen      run in offscreen mode.
  -s, --safe-mode       use more robust VRML parsing at the expense of some interactive features
  -w, --no-warnings     do not pause the program to display warnings

Detailed descriptions of selected options are provided below.

Saving and loading

Once a VRML file has been parsed and meshes have been built from it, it can be saved in a more convenient format for faster loading in the future. This is only relevant for very large files (>1 million meshes) which take more than a few seconds to load. Saving is done when launching GeViewer using the --destination (or -d) flag, optionally followed by the output filename (ending in .gev). If no filename is provided, the session will be saved in the working directory as viewer.gev. To reload this session, run the program again, passing the .gev file as the filenames argument.

geviewer viewer.gev

Running offscreen

It is often convenient to run the VRML parsing and mesh construction routine offscreen and save the resulting session for later. This can be done using the --off-screen (or -o) flag. This flag must be paired with the --destination flag in order for the session to be saved. As mentioned above, you can add the following line to your macro file to automatically run this process at the end of a simulation.

/control/shell geviewer /name/of/file.wrl -d /output/session/name.gev -o

Safe mode

By default, GeViewer uses its own VRML parser to extract the meshes for plotting. However, this parser has only been tested on a small sample set of Geant4 simulation results. If you encounter file parsing errors, try using the --safe-mode command line argument (and create an issue to report the problem). This will use a VRML parsing tool from vtk which should provide more robustness at the expense of some features. In safe mode, the program will be unable to distinguish trajectories, step markers, and detector components, and for large files the performance may be sluggish due to less efficient handling of the mesh data.

Viewing multiple files

If you want to view multiple files in the same viewer (e.g. to directly compare two geometries), pass in a list of filenames rather than a single argument.

geviewer /path/to/file1.wrl /path/to/file2.wrl /path/to/file3.wrl

This function only works for VRML files; previous GeViewer sessions cannot be opened simultaneously. However, you can always load multiple VRML files, save the session, and revisit it later as you would when viewing a single file.

Additional Info

License

Distributed under the MIT License. See LICENSE for more information.

Contact

Clarke Hardy – [e-mail]