gptmed 0.8.6

Efficient and customizable GPT-based framework for medical applications, enabling training, inference, and explainability of large language models in healthcare.

GptMed 🤖

A lightweight GPT-based language model framework for training custom question-answering models on any domain. This package provides a transformer-based GPT architecture that you can train on your own Q&A datasets - whether it's casual conversations, technical support, education, or any other domain.

Citation

If you use this model in your research, please cite:

@software{gptmed_2026,
  author = {Sanjog Sigdel},
  title = {GptMed: A custom causal question answering general purpose GPT Transformer Architecture Model},
  year = {2026},
  url = {https://github.com/sigdelsanjog/gptmed}
}

Table of Contents

• Installation
  • From PyPI (Recommended)
  • From Source
  • With Optional Dependencies
• Quick Start
  • Using the High-Level API
  • Inference (Generate Answers)
  • Using Command Line
  • Training Your Own Model
• Model Architecture
• Configuration
  • Model Sizes
  • Training Configuration
• Observability
• Project Structure
• Requirements
• Documentation
• Performance
• Examples
• Contributing
• Citation
• License
• Support

Installation

From PyPI (Recommended)

pip install gptmed

From Source

git clone https://github.com/sigdelsanjog/gptmed.git
cd gptmed
pip install -e .

With Optional Dependencies

# For development
pip install gptmed[dev]

# For training with logging integrations
pip install gptmed[training]

# For visualization (loss curves, metrics plots)
pip install gptmed[visualization]

# For Explainable AI features
pip install gptmed[xai]

# All dependencies
pip install gptmed[dev,training,visualization,xai]

Quick Start

Using the High-Level API

The easiest way to use GptMed is through the high-level API:

import gptmed

# 1. Create a training configuration
gptmed.create_config('my_config.yaml')

# 2. Edit my_config.yaml with your settings (data paths, model size, etc.)

# 3. Train the model
gptmed.train_from_config('my_config.yaml')

# 4. Generate answers
answer = gptmed.generate(
    checkpoint='model/checkpoints/best_model.pt',
    tokenizer='tokenizer/my_tokenizer.model',
    prompt='What is machine learning?',
    max_length=150,
    temperature=0.7
)
print(answer)

For a complete API testing workflow, see the gptmed-api folder with ready-to-run examples.

Inference (Generate Answers)

from gptmed.inference.generator import TextGenerator
from gptmed.model.architecture import GPTTransformer
from gptmed.model.configs.model_config import get_small_config

# Load model
config = get_small_config()
model = GPTTransformer(config)

# Load your trained checkpoint
# model.load_state_dict(torch.load('path/to/checkpoint.pt'))

# Create generator
generator = TextGenerator(
    model=model,
    tokenizer_path='path/to/tokenizer.model'
)

# Generate answer
question = "What's your favorite programming language?"
answer = generator.generate(
    prompt=question,
    max_length=100,
    temperature=0.7
)

print(f"Q: {question}")
print(f"A: {answer}")

Using Command Line

# Generate answers
gptmed-generate --prompt "How do I train a custom model?" --max-length 100

# Train model
gptmed-train --model-size small --num-epochs 10 --batch-size 16

Training Your Own Model

from gptmed.training.train import main
from gptmed.configs.train_config import get_default_config
from gptmed.model.configs.model_config import get_small_config

# Configure training
train_config = get_default_config()
train_config.batch_size = 16
train_config.num_epochs = 10
train_config.learning_rate = 3e-4

# Start training
main()

Model Architecture

The model uses a custom GPT-based transformer architecture:

• Embedding: Token + positional embeddings
• Transformer Blocks: Multi-head self-attention + feed-forward networks
• Parameters: ~10M (small), ~50M (medium)
• Context Length: 512 tokens
• Vocabulary: Custom SentencePiece tokenizer trained on your data

Configuration

Model Sizes

from gptmed.model.configs.model_config import (
    get_tiny_config,   # ~2M parameters - for testing
    get_small_config,  # ~10M parameters - recommended
    get_medium_config  # ~50M parameters - higher quality
)

Training Configuration

from gptmed.configs.train_config import TrainingConfig

config = TrainingConfig(
    batch_size=16,
    learning_rate=3e-4,
    num_epochs=10,
    warmup_steps=100,
    grad_clip=1.0
)

Observability

New in v0.4.0: Built-in training monitoring with Observer Pattern architecture.

Features

• 📊 Loss Curves: Track training/validation loss over time
• 📈 Metrics Tracking: Perplexity, gradient norms, learning rates
• 🔔 Callbacks: Console output, JSON logging, early stopping
• 📁 Export: CSV export, matplotlib visualizations
• 🔌 Extensible: Add custom observers for integrations (W&B, TensorBoard)

Quick Example

from gptmed.observability import MetricsTracker, ConsoleCallback, EarlyStoppingCallback

# Create observers
tracker = MetricsTracker(output_dir='./metrics')
console = ConsoleCallback(print_every=50)
early_stop = EarlyStoppingCallback(patience=3)

# Use with TrainingService (automatic)
from gptmed.services import TrainingService
service = TrainingService(config_path='config.yaml')
service.train()  # Automatically creates MetricsTracker

# Or use with Trainer directly
trainer = Trainer(model, train_loader, config, observers=[tracker, console])
trainer.train()

Available Observers

Observer	Description
MetricsTracker	Comprehensive metrics collection with export capabilities
ConsoleCallback	Real-time console output with progress bars
JSONLoggerCallback	Structured JSON logging for analysis
EarlyStoppingCallback	Stop training when validation loss plateaus
LRSchedulerCallback	Learning rate scheduling integration

See XAI.md for future Explainable AI features roadmap.

Project Structure

gptmed/
├── model/
│   ├── architecture/      # GPT transformer implementation
│   └── configs/           # Model configurations
├── inference/
│   ├── generator.py       # Text generation
│   └── sampling.py        # Sampling strategies
├── training/
│   ├── train.py          # Training script
│   ├── trainer.py        # Training loop
│   └── dataset.py        # Data loading
├── observability/         # Training monitoring & XAI (v0.4.0+)
│   ├── base.py           # Observer pattern interfaces
│   ├── metrics_tracker.py # Loss curves & metrics
│   └── callbacks.py      # Console, JSON, early stopping
├── tokenizer/
│   └── train_tokenizer.py # SentencePiece tokenizer
├── configs/
│   └── train_config.py   # Training configurations
├── services/
│   └── training_service.py # High-level training orchestration
└── utils/
    ├── checkpoints.py    # Model checkpointing
    └── logging.py        # Training logging

Requirements

• Python >= 3.8
• PyTorch >= 2.0.0
• sentencepiece >= 0.1.99
• numpy >= 1.24.0
• tqdm >= 4.65.0

Documentation

📚 Complete User Manual - Step-by-step guide for training your own model

Quick Links

• User Manual - Start here! Complete training pipeline guide
• Architecture Guide - Understanding the model architecture
• XAI Roadmap - Explainable AI features & implementation guide
• Deployment Guide - Publishing to PyPI
• Changelog - Version history

Performance

Model Size	Parameters	Training Time	Inference Speed
Tiny	~2M	2 hours	~100 tokens/sec
Small	~10M	8 hours	~80 tokens/sec
Medium	~50M	24 hours	~50 tokens/sec

Tested on GTX 1080 8GB

Examples

Domain-Agnostic Usage

GptMed works with any domain - just train on your own Q&A data:

# Technical Support Bot
question = "How do I reset my WiFi router?"
answer = generator.generate(question, temperature=0.7)

# Educational Assistant
question = "Explain the water cycle in simple terms"
answer = generator.generate(question, temperature=0.6)

# Customer Service
question = "What is your return policy?"
answer = generator.generate(question, temperature=0.5)

# Medical Q&A (example domain)
question = "What are the symptoms of flu?"
answer = generator.generate(question, temperature=0.7)

Training Observability (v0.4.0+)

Monitor your training with built-in observability:

from gptmed.observability import MetricsTracker, ConsoleCallback

# Create observers
tracker = MetricsTracker(output_dir='./metrics')
console = ConsoleCallback(print_every=10)

# Train with observability
gptmed.train_from_config(
    'my_config.yaml',
    observers=[tracker, console]
)

# After training - get the report
report = tracker.get_report()
print(f"Final Loss: {report['final_loss']:.4f}")
print(f"Total Steps: {report['total_steps']}")

# Export metrics
tracker.export_to_csv('training_metrics.csv')
tracker.plot_loss_curves('loss_curves.png')  # Requires matplotlib

Contributing

Contributions are welcome! Please feel free to submit a Pull Request.

1. Fork the repository
2. Create your feature branch (git checkout -b feature/AmazingFeature)
3. Commit your changes (git commit -m 'Add some AmazingFeature')
4. Push to the branch (git push origin feature/AmazingFeature)
5. Open a Pull Request

License

This project is licensed under the MIT License - see the LICENSE file for details.

Acknowledgments

• MedQuAD dataset creators
• PyTorch team

Support

• 📫 User Manual** - Complete step-by-step training guide
• 📫 Issues: GitHub Issues
• 💬 Discussions: GitHub Discussions
• 📧 Email: [e-mail] | [e-mail]

Changelog

Full Changelog

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Made with ❤️ from Nepal