groupfilter - a software tool for efficient filtering of Morpheus search engine results
groupfilter is a module based on the pyteomics (http://pythonhosted.org/pyteomics/) package that increases the number of identifications above FDR threshold for Morpheus search engine results.
Dependencies
pyteomics (>= 3.0)
numpy
How to install
best way to install groupfilter is with pip: pip install numpy pyteomics groupfilter.
alternatively, you can download source code for each library and run python setup.py install for each of them.
There may be other ways to install numpy, depending on your platform.
How to use
groupfilter.py file1.tsv [file2.tsv ...] db.fasta
- positional arguments:
files list of Morpheus PSM files
db.fasta path to FASTA file
Links
BitBucket repo & issue tracker: https://bitbucket.org/levitsky/groupfilter
Mailing list: pyteomics@googlegroups.com
1 maintainer
Release files for groupfilter 0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| groupfilter-0.2.tar.gz | 3.5 kB | Details |
Release files / groupfilter-0.2.tar.gz
| Download URL | groupfilter-0.2.tar.gz |
|---|---|
| Size | 3.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
555bfe1d14630ec32aaf91673fc793cd8df8ff755acaa30f1514bea95d12f3ac
|
|
BLAKE2b-256 checksum How to use checksums |
0bebde66abed0384adf01b91cf474ff1cfd7876c14a94d58edb0bdcdd01163cb
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
