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Project Description

groupfilter - a software tool for efficient filtering of Morpheus search engine results

groupfilter is a module based on the pyteomics (http://pythonhosted.org/pyteomics/) package that increases the number of identifications above FDR threshold for Morpheus search engine results.

Dependencies

  • pyteomics (>= 3.0)
  • numpy

How to install

  • best way to install groupfilter is with pip: pip install numpy pyteomics groupfilter.
  • alternatively, you can download source code for each library and run python setup.py install for each of them.
  • There may be other ways to install numpy, depending on your platform.

How to use

groupfilter.py file1.tsv [file2.tsv ...] db.fasta

positional arguments:

files list of Morpheus PSM files

db.fasta path to FASTA file

Release History

Release History

0.2

This version

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

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0.1

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
groupfilter-0.2.tar.gz (3.5 kB) Copy SHA256 Checksum SHA256 Source Apr 7, 2015

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