gtdbtk-db-download 1.0.1

Minimal toolkit for downloading the GTDB-Tk database to disk.

GTDB-Tk Database Download

Minimal toolkit for downloading the GTDB-Tk database to disk.

This is not the recommended way to download the GTDB-Tk reference database, please see here for the reccomended method.

This softare may be useful for users who are experiencing intermittent connection errors, or slow download speeds.

📚 Requirements

This software requires Python >=3.8 and makes use of the following packages:

• requests
• tqdm
• typer

⚙️ Installation

In a new virtual environment, or conda environment that is running Python >=3.8, simply run:

python -m pip install gtdbtk_db_download

🚀 Usage

For a complete list of options, run: gtdbtk_db_download --help

Example usage downloading to the /tmp/db directory:

gtdbtk_db_download /tmp/db --threads 10

Example output

[2023-06-16 13:51:41] - gtdbtk_downloader v1.0.0
[2023-06-16 13:51:41] - Creating output directory.
[2023-06-16 13:51:41] - Loading R214 manifest
[2023-06-16 13:51:42] - Creating queue
[2023-06-16 13:51:42] - Downloading files
[2023-06-16 16:00:00] - Done.