GTDB-Tk Database Download

Minimal toolkit for downloading the GTDB-Tk database to disk.

This is not the recommended way to download the GTDB-Tk reference database, please see here for the reccomended method.

This softare may be useful for users who are experiencing intermittent connection errors, or slow download speeds.

📚 Requirements

This software requires Python >=3.8 and makes use of the following packages:

⚙️ Installation

In a new virtual environment, or conda environment that is running Python >=3.8, simply run:

python -m pip install gtdbtk_db_download

🚀 Usage

For a complete list of options, run: gtdbtk_db_download --help

Example usage downloading to the /tmp/db directory:

gtdbtk_db_download /tmp/db --threads 10

Example output

[2023-06-16 13:51:41] - gtdbtk_downloader v1.0.0
[2023-06-16 13:51:41] - Creating output directory.
[2023-06-16 13:51:41] - Loading R214 manifest
[2023-06-16 13:51:42] - Creating queue
[2023-06-16 13:51:42] - Downloading files
[2023-06-16 16:00:00] - Done.

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gtdbtk_db_download-1.0.1.tar.gz (2.4 MB view details)

Uploaded Jun 16, 2023 Source

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Download URL: gtdbtk_db_download-1.0.1.tar.gz
Upload date: Jun 16, 2023
Size: 2.4 MB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/4.0.1 CPython/3.11.4

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