GTDB-Tk Database Download
Minimal toolkit for downloading the GTDB-Tk database to disk.
This is not the recommended way to download the GTDB-Tk reference database, please see here for the reccomended method.
This softare may be useful for users who are experiencing intermittent connection errors, or slow download speeds.
📚 Requirements
This software requires Python >=3.8 and makes use of the following packages:
⚙️ Installation
In a new virtual environment, or conda environment that is running Python >=3.8, simply run:
python -m pip install gtdbtk_db_download
🚀 Usage
For a complete list of options, run: gtdbtk_db_download --help
Example usage downloading to the /tmp/db directory:
gtdbtk_db_download /tmp/db --threads 10
Example output
[2023-06-16 13:51:41] - gtdbtk_downloader v1.0.0
[2023-06-16 13:51:41] - Creating output directory.
[2023-06-16 13:51:41] - Loading R214 manifest
[2023-06-16 13:51:42] - Creating queue
[2023-06-16 13:51:42] - Downloading files
[2023-06-16 16:00:00] - Done.
1 maintainer
Metadata
1 maintainer
Release files for gtdbtk-db-download 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| gtdbtk_db_download-1.0.1.tar.gz | 2.4 MB | Details |
Release files / gtdbtk_db_download-1.0.1.tar.gz
| Download URL | gtdbtk_db_download-1.0.1.tar.gz |
|---|---|
| Size | 2.4 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
b32b61d6860c0db79903fa2a0f0aac0462acee1b37682c4ee2e02a7ce996b601
|
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BLAKE2b-256 checksum How to use checksums |
a933b1b4adf38658c51691a73f6715133b409efdf9f25b7651e56dcacd3a4f99
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.11.4
|
