HiCMatrix
This library implements the central class of HiCExplorer to manage Hi-C interaction matrices. It is separated from the main project to enable Hi-C matrices in other projects without the dependency on HiCExplorer. Moreover, it enables us to use the already separated pyGenomeTracks (former hicPlotTADs) in HiCExplorer because mutual dependencies are resolved.
With version 8, we dropped the support for Python 2.
Version 14 introduced the official support for scool file format, used by scHiCExplorer since version 5: https://github.com/joachimwolff/scHiCExplorer and https://schicexplorer.readthedocs.io/en/latest/.
Read support
h5
cool / mcool / scool
hicpro
homer
Write support
h5
cool / mcool
scool
homer
ginteractions
hicpro
Citation:
Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A Grüning. Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization, Nucleic Acids Research, Volume 48, Issue W1, 02 July 2020, Pages W177–W184, https://doi.org/10.1093/nar/gkaa220
3 maintainers
Metadata
3 maintainers
Release files for HiCMatrix 17.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| hicmatrix-17.2.tar.gz | 43.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| HiCMatrix-17.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 91.3 kB
Release files / hicmatrix-17.2.tar.gz
| Download URL | hicmatrix-17.2.tar.gz |
|---|---|
| Size | 43.8 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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twine/4.0.2 CPython/3.11.9
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Release files / HiCMatrix-17.2-py3-none-any.whl
| Download URL | HiCMatrix-17.2-py3-none-any.whl |
|---|---|
| Size | 47.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.9
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