Ingress2QSIRecon
A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.
Overview
This tool can be used to import data from bespoke and widely-used DWI preprocessing pipelines (e.g., Human Connectome Project and UK Biobank) into QSIRecon for post-processing.
Installation
This project can be installed via PyPi. In your virtual environment run
pip install Ingress2QSIRecon
For the master/development branch, you can clone the github repo, and run from within it:
pip install -e .
Usage
Assuming you have the data to ingress locally availble, you can run the following:
ingress2qsirecon \
/PATH/TO/INPUT/DATA \ # E.g., path to HCP1200 directory
/PATH/TO/OUTPUT \ # BIDS directory with ingressed data will be made here
PIPELINE_NAME \ # Currently support "hcpya" and "ukb" \
-w /PATH/TO/WORKING/DIR \ # Where intermediate files and workflow information will be stored
--participant-label 100307 # Name(s) of folder within /PATH/TO/INPUT/DATA. If not specified, will process everyone
1 maintainer
Metadata
1 maintainer
Release files for Ingress2QSIRecon 0.3.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ingress2qsirecon-0.3.0.tar.gz | 18.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ingress2qsirecon-0.3.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 38.3 kB
Release files / ingress2qsirecon-0.3.0.tar.gz
| Download URL | ingress2qsirecon-0.3.0.tar.gz |
|---|---|
| Size | 18.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.2.0 CPython/3.9.25
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Release files / ingress2qsirecon-0.3.0-py3-none-any.whl
| Download URL | ingress2qsirecon-0.3.0-py3-none-any.whl |
|---|---|
| Size | 20.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.2.0 CPython/3.9.25
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