Skip to main content
This is a pre-production deployment of Warehouse. Changes made here affect the production instance of PyPI (
Help us improve Python packaging - Donate today!

A module and scripts for analysis of whole-mount in-situ hybridisation images.

Project Description

The package consists of isimage module and analyse_image and select_images command line scripts. Test data and images for the scripts will be installed in the corresponding subfolders of isimage package.


The package depends on OpenCV >= 3.0.0. Please install it from Multithreading functionality of select_images script depends on IPython.parallel, however this dependency is optional.

Windows: The easiest way, is to install Anaconda package first. Then run pip and command line tools in Anaconda’s console.

Linux: Before installation please make sure you have jpeg-dev and tiff-dev packages installed.

Then run pip install isimage

Command line tools usage examples:

analyse_image -i <isimage installation path>/isimage/analyse_image/test_images/17-BLIMP-DOR003.jpg -o test_result.pptx

select_images -g <isimage installation path>/isimage/select_images/test_tasks.txt -c <isimage installation path>/isimage/select_images/cleared_model.dump -r result -p8

Release History

Release History

This version
History Node


History Node


History Node


Download Files

Download Files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
isimage-0.1.2.tar.gz (36.4 MB) Copy SHA256 Checksum SHA256 Source Nov 19, 2017

Supported By

WebFaction WebFaction Technical Writing Elastic Elastic Search Pingdom Pingdom Monitoring Dyn Dyn DNS Sentry Sentry Error Logging CloudAMQP CloudAMQP RabbitMQ Heroku Heroku PaaS Kabu Creative Kabu Creative UX & Design Fastly Fastly CDN DigiCert DigiCert EV Certificate Rackspace Rackspace Cloud Servers DreamHost DreamHost Log Hosting