ITKDissolve
Overview
This is a module for the Insight Toolkit (ITK) that provides functionality to discard pixels within a masked region. Unlike masking, the pixels in the masked region are replaced (dissolved) by their nearest pixels outside the mask. This can be useful to clean-up label fields, e.g. to remove small islands/holes or remove entire labels, and replace them by the adjacent labels.
The module includes a filter called DissolveMaskImageFilter.
import itk
labels = itk.imread('path/to/labels.mha').astype(itk.US)
mask = itk.imread('path/to/mask.mha').astype(itk.UC)
ImageType = type(labels)
MaskType = type(mask)
dissolve = itk.DissolveMaskImageFilter[ImageType, MaskType].New()
dissolve.SetInput(labels)
dissolve.SetMaskImage(mask)
dissolve.Update()
modified_labels = dissolve.GetOutput()
itk.imwrite(modified_labels, 'modified_labels2.mha')
Or using the pythonic API:
import itk
labels = itk.imread('path/to/labels.mha').astype(itk.US)
mask = itk.imread('path/to/mask.mha').astype(itk.US)
modified_labels = itk.dissolve_mask_image_filter(labels, mask_image=mask)
itk.imwrite(modified_labels, 'path/to/modified_labels.mha')
Installation
To install the binary Python packages:
python -m pip install itk-dissolve
1 maintainer
Metadata
1 maintainer
Release files for itk-dissolve 1.0.7
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
Total release size: 34.3 MB
Release files / itk_dissolve-1.0.7-cp311-abi3-win_amd64.whl
| Download URL | itk_dissolve-1.0.7-cp311-abi3-win_amd64.whl |
|---|---|
| Size | 555.7 kB |
| Tags | CPython 3.11 Windows x86-64 abi3 |
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Release files / itk_dissolve-1.0.7-cp311-abi3-manylinux_2_28_x86_64.whl
| Download URL | itk_dissolve-1.0.7-cp311-abi3-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.11 Linux glibc 2.28+ x86-64 abi3 |
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Release files / itk_dissolve-1.0.7-cp311-abi3-manylinux_2_28_aarch64.whl
| Download URL | itk_dissolve-1.0.7-cp311-abi3-manylinux_2_28_aarch64.whl |
|---|---|
| Size | 2.0 MB |
| Tags | CPython 3.11 Linux glibc 2.28+ ARM64 abi3 |
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Release files / itk_dissolve-1.0.7-cp311-abi3-manylinux_2_17_x86_64.whl
| Download URL | itk_dissolve-1.0.7-cp311-abi3-manylinux_2_17_x86_64.whl |
|---|---|
| Size | 700.8 kB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 abi3 |
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Release files / itk_dissolve-1.0.7-cp311-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | itk_dissolve-1.0.7-cp311-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 abi3 |
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Release files / itk_dissolve-1.0.7-cp311-abi3-macosx_11_0_arm64.whl
| Download URL | itk_dissolve-1.0.7-cp311-abi3-macosx_11_0_arm64.whl |
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| Size | 470.7 kB |
| Tags | CPython 3.11 abi3 macOS 11.0+ ARM64 |
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Release files / itk_dissolve-1.0.7-cp311-abi3-macosx_10_9_x86_64.whl
| Download URL | itk_dissolve-1.0.7-cp311-abi3-macosx_10_9_x86_64.whl |
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| Size | 572.3 kB |
| Tags | CPython 3.11 abi3 macOS 10.9+ x86-64 |
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Release files / itk_dissolve-1.0.7-cp310-cp310-win_amd64.whl
| Download URL | itk_dissolve-1.0.7-cp310-cp310-win_amd64.whl |
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| Size | 554.6 kB |
| Tags | CPython 3.10 Windows x86-64 |
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Release files / itk_dissolve-1.0.7-cp310-cp310-manylinux_2_28_x86_64.whl
| Download URL | itk_dissolve-1.0.7-cp310-cp310-manylinux_2_28_x86_64.whl |
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| Size | 2.2 MB |
| Tags | CPython 3.10 Linux glibc 2.28+ x86-64 |
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| Tags | CPython 3.10 Linux glibc 2.28+ ARM64 |
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| Download URL | itk_dissolve-1.0.7-cp310-cp310-manylinux_2_17_x86_64.whl |
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| Size | 708.0 kB |
| Tags | CPython 3.10 Linux glibc 2.17+ x86-64 |
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| Download URL | itk_dissolve-1.0.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
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Release files / itk_dissolve-1.0.7-cp310-cp310-macosx_11_0_arm64.whl
| Download URL | itk_dissolve-1.0.7-cp310-cp310-macosx_11_0_arm64.whl |
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| Size | 466.8 kB |
| Tags | CPython 3.10 macOS 11.0+ ARM64 |
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| Download URL | itk_dissolve-1.0.7-cp310-cp310-macosx_10_9_x86_64.whl |
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| Size | 572.0 kB |
| Tags | CPython 3.10 macOS 10.9+ x86-64 |
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Release files / itk_dissolve-1.0.7-cp39-cp39-win_amd64.whl
| Download URL | itk_dissolve-1.0.7-cp39-cp39-win_amd64.whl |
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| Size | 555.4 kB |
| Tags | CPython 3.9 Windows x86-64 |
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| Download URL | itk_dissolve-1.0.7-cp39-cp39-manylinux_2_28_x86_64.whl |
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| Size | 2.2 MB |
| Tags | CPython 3.9 Linux glibc 2.28+ x86-64 |
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| Tags | CPython 3.9 Linux glibc 2.28+ ARM64 |
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| Download URL | itk_dissolve-1.0.7-cp39-cp39-manylinux_2_17_x86_64.whl |
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| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 |
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| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 |
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| Download URL | itk_dissolve-1.0.7-cp39-cp39-macosx_11_0_arm64.whl |
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| Download URL | itk_dissolve-1.0.7-cp39-cp39-macosx_10_9_x86_64.whl |
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| Download URL | itk_dissolve-1.0.7-cp38-cp38-manylinux_2_28_x86_64.whl |
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| Tags | CPython 3.8 Linux glibc 2.28+ ARM64 |
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| Download URL | itk_dissolve-1.0.7-cp38-cp38-manylinux_2_17_x86_64.whl |
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| Tags | CPython 3.8 Linux glibc 2.17+ x86-64 |
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| Size | 2.2 MB |
| Tags | CPython 3.8 Linux glibc 2.17+ x86-64 |
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twine/5.1.1 CPython/3.9.19
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Release files / itk_dissolve-1.0.7-cp38-cp38-macosx_10_9_x86_64.whl
| Download URL | itk_dissolve-1.0.7-cp38-cp38-macosx_10_9_x86_64.whl |
|---|---|
| Size | 572.1 kB |
| Tags | CPython 3.8 macOS 10.9+ x86-64 |
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SHA-256 checksum How to use checksums |
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No |
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twine/5.1.1 CPython/3.9.19
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Security for itk-dissolve 1.0.7
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