KGWAS

Project description

KGWAS: genetics discovery powered by functional genomics knowledge graph

Installation

pip install kgwas

How to use KGWAS

from kgwas import KGWAS, KGWAS_Data
data = KGWAS_Data()
data.load_kg()

data.load_external_gwas(PATH)
data.process_gwas_file()
data.prepare_split()

run = KGWAS(data,
            weight_bias_track = True,
            device = device,
            proj_name = 'KGWAS',
            exp_name = exp_name,
            seed = seed)

run.initialize_model()
run.train(epoch = 10)

Reproducing experiments

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This version

0.0.1

Nov 6, 2024

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