kmat tools

Description

kmat_tools is a tool that creates unitig abundance matrices from a list of FASTA/FASTQ files. It requires the installation of zlib, gcc, and gccat.

Installation

Before using kmat_tools, make sure you have the following dependencies installed on your system:

• zlib
• gcc
• gccat

To install kmat_tools, follow these steps:

1. Clone the repository:

   git clone https://github.com/your-username/kmat_tools.git
   

2. Build the tool:

   cd kmat_tools
   make
   

Usage

To use kmat_tools, follow these steps:

1. Prepare a list of FASTA/FASTQ files that you want to process.

2. Run the tool with the following command:

   kmat_tools /path/to/your/list_of_files.txt
   

   Replace /path/to/your/list_of_files.txt with the actual path to your list of files.

Example

To test kmat_tools with a sample dataset, you can use the provided fof.test file. Run the following command: