kmtools 0.0.27

# KMTools

[](https://anaconda.org/kimlab/kmtools/) [](https://kimlab.gitlab.io/kmtools/v0.0.27/) [](https://gitlab.com/kimlab/kmtools/commits/v0.0.27/) [](https://kimlab.gitlab.io/kmtools/v0.0.27/htmlcov/)

Bits of reusable code to make our lives easier.

Follows the Whole Sort of General Mish Mash design principle.

## Contents

• [Tools](#tools) - [DB tools](#db-tools) - [DF tools](#df-tools) - [PY tools](#py-tools) - [Sequence tools](#sequence-tools) - [Structure tools](#structure-tools) - [System tools](#system-tools)

• [Contributing](#contributing)

## Tools

### Structure tools

Using [kmbio](https://github.com/kimlaborg/kmbio) instead of [biopython](https://github.com/biopython/biopython) leads to substantially better performance (> 2x with lots of room for improvement).

#### To do

• [ ] Cythonize more bottlenecks to improve performance.

• [ ] Add Python / Cython code for generating biological assemblies.

## Contributing

• Make sure all tests pass before merging into master.

• Follow the PEP8 / PyFlake / Flake8 / etc. guidelines.

• Add tests for new code.

• Try to document things.

• Break any / all of the above if you have a good reason.