LINEX2 python package

The software is the implementation for Lipid network computation and analysis for the Lipid Network Explorer (LINEX) version 2.

The LINEX web service can be found here: https://exbio.wzw.tum.de/linex/

Publication

If you use this package, please cite our publication:

Rose and Koehler et al. "Lipid network and moiety analysis for revealing enzymatic dysregulation and mechanistic alterations from lipidomics data", Briefings in Bioinformatics 2023, bbac572; doi: https://doi.org/10.1093/bib/bbac572

Data in package

The package includes data from the Reactome and Rhea databases.

• Rhea data is available under the Creative Commons Attribution (CC BY 4.0) License and is published here: Bansal et al. "Rhea, the reaction knowledgebase in 2022". Nucleic Acids Res. (2021), DOI: 10.1093/nar/gkab1016
• Reactome data is available under the Creative Commons Public Domain (CC0) License and is published here: Jassal et al. "The reactome pathway knowledgebase". Nucleic Acids Res. (2020), DOI: 10.1093/nar/gkz1031

License

The software is published under the AGPLv3 license.

The software includes code from the

• Rhea data is available under the Creative Commons Attribution (CC BY 4.0) License and is published here: Bansal et al. "Rhea, the reaction knowledgebase in 2022". Nucleic Acids Res. (2021), DOI: 10.1093/nar/gkab1016
• Reactome data is available under the Creative Commons Public Domain (CC0) License and is published here: Jassal et al. "The reactome pathway knowledgebase". Nucleic Acids Res. (2020), DOI: 10.1093/nar/gkz1031

LINEX webtool published under the same license and written by the same authors.