linex2 1.1.16

Lipid Network Explorer 2 (LINEX2) package. Python backend to the LINEX web-app

LINEX2 python package

The software is the implementation for Lipid network computation and analysis for the Lipid Network Explorer (LINEX) version 2.

The LINEX web service can be found here: https://exbio.wzw.tum.de/linex/

Publication

If you use this package, please cite our publication:

Rose and Koehler et al. "Lipid network and moiety analysis for revealing enzymatic dysregulation and mechanistic alterations from lipidomics data", Briefings in Bioinformatics 2023, bbac572; doi: https://doi.org/10.1093/bib/bbac572

Data in package

The package includes data from the Reactome and Rhea databases.

• Rhea data is available under the Creative Commons Attribution (CC BY 4.0) License and is published here: Bansal et al. "Rhea, the reaction knowledgebase in 2022". Nucleic Acids Res. (2021), DOI: 10.1093/nar/gkab1016
• Reactome data is available under the Creative Commons Public Domain (CC0) License and is published here: Jassal et al. "The reactome pathway knowledgebase". Nucleic Acids Res. (2020), DOI: 10.1093/nar/gkz1031

License

The software is published under the AGPLv3 license.

The software includes code from the

• Rhea data is available under the Creative Commons Attribution (CC BY 4.0) License and is published here: Bansal et al. "Rhea, the reaction knowledgebase in 2022". Nucleic Acids Res. (2021), DOI: 10.1093/nar/gkab1016
• Reactome data is available under the Creative Commons Public Domain (CC0) License and is published here: Jassal et al. "The reactome pathway knowledgebase". Nucleic Acids Res. (2020), DOI: 10.1093/nar/gkz1031

LINEX webtool published under the same license and written by the same authors.