Mass spectrometry query language python implementation
Project description
MASS Query Languge
This is the repository to define the language and reference implementation. This contains several parts
- Language Grammar
- Reference Implementation Python API
- Commandline Utility to execute
- NextFlow Workflow For Large Scale Analysis
- ProteoSAFe workflow
- Dash interactive exploration
Developers/Contact
Mingxun Wang is the main creator and developer of MSQL. Contact me for contributing or using it!
Docs
Python API
To install massql
pip install massql
Here is the most basic operation you can do
from massql import msql_engine
results_df = msql_engine.process_query(input_query, input_filename)
Web API
/api
/parse
/visualize/ms1
/visualize/ms2
License
MIT License
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