A small package for making point cloud objects whole in the presence of PBC
Project description
mdvwhole
Density based object completion over PBC. This repository eventually will be merged with MDVoxelSegmentation.
Usage
Install the dependencies at the top of whole.py using pip.
Making a single gro whole:
python whole.py -f your_gro.gro -x your_gro -o whole.gro
Making a trajectory whole:
python whole.py -f your_gro.gro -x your_xtc -o whole.xtc
Using a non-default selection:
python whole.py -f your_gro.gro -x your_xtc -o whole.xtc -sel 'not resname W WF ION and not name PO4'
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
mdvwhole-0.0.1.tar.gz
(14.8 kB
view hashes)
Built Distribution
mdvwhole-0.0.1-py3-none-any.whl
(14.4 kB
view hashes)