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A small package for making point cloud objects whole in the presence of PBC

Project description

mdvwhole

Density based object completion over PBC. This repository eventually will be merged with MDVoxelSegmentation.

Usage

Install the dependencies at the top of whole.py using pip.

Making a single gro whole:

python whole.py -f your_gro.gro -x your_gro -o whole.gro

Making a trajectory whole:

python whole.py -f your_gro.gro -x your_xtc -o whole.xtc

Using a non-default selection:

python whole.py -f your_gro.gro -x your_xtc -o whole.xtc -sel 'not resname W WF ION and not name PO4'

Project details


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