MetaClock
MetaClock is an integrated framework for reconstructing time-resolved evolutionary history for microbial genomes using large-scale (meta)genomics data from ancient and contemporary samples.
Main features
- Automated reconstruction of whole-genome alignment from large-scale metagenomics data using multiple reference genomes
- Automated authentication for ancient DNA origin, damaged sites removal, SNV analysis etc.
- Rich utilities for manual curation to enhance the quality of phylogenetic and molecular dating analysis
Installation
Bioconda
You can install MetaClock using conda as follows:
The package will be publically available once the manuscript is submitted
Repository
You can clone the MetaClock repository from GitHub:
The package will be publically available once the manuscript is submitted
Dependencies:
Tutorials
Support
Citation
1 maintainer
Release files for metaclock 1.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| metaclock-1.0.2.tar.gz | 37.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| metaclock-1.0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 92.7 kB
Release files / metaclock-1.0.2.tar.gz
| Download URL | metaclock-1.0.2.tar.gz |
|---|---|
| Size | 37.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.4.1 importlib_metadata/3.10.0 pkginfo/1.6.1 requests/2.24.0 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.5
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Release files / metaclock-1.0.2-py3-none-any.whl
| Download URL | metaclock-1.0.2-py3-none-any.whl |
|---|---|
| Size | 54.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.4.1 importlib_metadata/3.10.0 pkginfo/1.6.1 requests/2.24.0 requests-toolbelt/0.9.1 tqdm/4.50.2 CPython/3.8.5
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