metagentools 0.0.4

Set of tools used for metagenomics research project

metagentools

This repository includes the code developed as part of our metagenomics project. The code is structured into general code and submodules to cover the various aspects of the project:

General utility code to be used across the project: 1. art: use ART-ILLUMINA read simulator package from a jupyter notebook 1. wandb: use to open, retrieve, use WandB runs and artifacts accross the project 1. core: general code (WIP)

Submodules: 1. cnn_virus - architecture - data - utils

This is a work in progress, and some functions or modules may be broken. We cannot provide support. Use at your own risk.

Installation: - pip install metagentools for the stable version

• pip install git+https://github.com/vtecftwy/metagentools.git@main for the latest committed version

Requirements: - python 3.10 is required for this package