metric-visualizer 0.7.0

For easy managing performance metric

MetricVisualizer - for easy managing performance metric

Automated metric visualization for comparison experiments

• Box plot
• Trajectory plot
• Scatter plot
• Bar plot
• Violin plot
• Scott-Knott rank test plot
• A12 effect size plot
• Wilconxon Rank test
• On the way

Install

If you want to make tikz(latex) plots, you need to install texlive (other latex release version are not tested).

pip install metric_visualizer

用法说明 Usage

[Bash] Instant Visualization of MetricVisualizer file (named example.mv)

mvis example.mv

假设存在多组对比实验(或者一组参数设置)，则称之为trial，每组实验存在多个metric(例如AUC，Accuracy，F1，Loss等)，
每组参照实验重复n词，则使用以下方法监听实验结果(监听结束后可自动绘制图形)：
Assume that there exist multiple sets of comparison experiments (or a set of parameter settings), called trials, with
multiple metrics (e.g., AUC, accuracy, F1, loss, etc.) for each set of experiments.
Repeat n words for each set of reference experiments, and then listen to the results of the experiments using the
following method.

```python
import random
from metric_visualizer import MetricVisualizer
import numpy as np

MV = MetricVisualizer(name='example', trial_tag='Model')

repeat = 100  # number of repeats
metric_num = 3  # number of metrics

#  利用metric_visualizer监听实验吧并保存实验结果，随时重新绘制图像
trial_names = ['LSTM', 'CNN', 'BERT']  # fake trial names
# trial_names = ['NSGA-II', 'NSGA-III', 'MOEA/D']  # fake trial names
# trial_names = ['Hyperparameter Setting 1', 'Hyperparameter Setting 2', 'Hyperparameter Setting 3']  # fake trial names

for n_trial in range(len(trial_names)):
    for r in range(repeat):  # repeat the experiments to plot violin or box figure
        metrics = [(np.random.random() + n + (1 if random.random() > 0.5 else -1)) for n in
                   range(metric_num)]  # n is metric scale factor
        for i, m in enumerate(metrics):
            # MV.add_metric(metric_name='metric{}'.format(i + 1), value=m)  # add metric by custom name and value
            MV.log_metric(trial_name=trial_names[n_trial], metric_name='metric{}'.format(i + 1),
                          value=m)  # add metric by custom name and value
    # MV.next_trial()  # next_trial() should be used with add_metric() to add metrics of different trials

# MV.remove_outliers()  # remove outliers

MV.summary(no_print=True)
MV.traj_plot_by_trial(xlabel='', xrotation=30, minorticks_on=True)
MV.violin_plot_by_trial()
MV.box_plot_by_trial()
MV.box_plot_by_trial()
MV.avg_bar_plot_by_trial()
MV.sum_bar_plot_by_trial()

MV.traj_plot_by_metric(xlabel='', xrotation=30, minorticks_on=True)
MV.violin_plot_by_metric()
MV.box_plot_by_metric()
MV.box_plot_by_metric()
MV.avg_bar_plot_by_metric()
MV.sum_bar_plot_by_metric()

MV.scott_knott_plot(plot_type='box', minorticks_on=False)
MV.scott_knott_plot(plot_type='violin', minorticks_on=False)  # save example into .texg and .pdf format

# MV.A12_bar_plot()  # need to install R language and rpy2 package

rank_test_result = MV.rank_test_by_trail('trial1')
rank_test_result = MV.rank_test_by_metric('metric1')

print(MV.rank_test_by_trail('trial0'))
print(MV.rank_test_by_metric('metric1'))

 -------------------- Metric Summary --------------------
╒══════════╤═════════╤══════════════════════════════════════════════════════════════╤═════════════════════════════════════════════════════════════╕
│ Metric   │ Trial   │ Values                                                       │ Summary                                                     │
╞══════════╪═════════╪══════════════════════════════════════════════════════════════╪═════════════════════════════════════════════════════════════╡
│ Metric-1 │ trial-0 │ [0.35, 0.65, 0.67, 0.51, 0.04, 0.43, 0.46, 0.58, 0.11, 0.66] │ ['Avg:0.45, Median: 0.48, IQR: 0.22, Max: 0.67, Min: 0.04'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-1 │ trial-1 │ [0.52, 0.1, 0.11, 0.86, 0.49, 0.7, 0.77, 0.96, 0.16, 0.65]   │ ['Avg:0.53, Median: 0.58, IQR: 0.41, Max: 0.96, Min: 0.1']  │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-1 │ trial-2 │ [0.73, 0.99, 0.13, 0.72, 0.63, 0.61, 0.14, 0.85, 0.71, 0.86] │ ['Avg:0.64, Median: 0.72, IQR: 0.17, Max: 0.99, Min: 0.13'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-1 │ trial-3 │ [0.99, 0.69, 0.86, 0.2, 0.4, 0.1, 0.05, 0.07, 0.95, 0.31]    │ ['Avg:0.46, Median: 0.36, IQR: 0.62, Max: 0.99, Min: 0.05'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-1 │ trial-4 │ [0.58, 0.95, 0.73, 0.63, 0.04, 0.19, 0.5, 0.9, 0.64, 0.89]   │ ['Avg:0.6, Median: 0.64, IQR: 0.27, Max: 0.95, Min: 0.04']  │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-2 │ trial-0 │ [1.58, 1.32, 1.98, 1.76, 1.31, 1.6, 1.6, 1.22, 1.3, 1.19]    │ ['Avg:1.49, Median: 1.45, IQR: 0.29, Max: 1.98, Min: 1.19'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-2 │ trial-1 │ [1.88, 1.67, 1.77, 1.94, 1.01, 1.6, 1.25, 1.63, 1.62, 1.91]  │ ['Avg:1.63, Median: 1.65, IQR: 0.21, Max: 1.94, Min: 1.01'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-2 │ trial-2 │ [1.4, 1.94, 1.28, 1.78, 1.01, 1.08, 1.21, 1.82, 1.78, 1.18]  │ ['Avg:1.45, Median: 1.34, IQR: 0.59, Max: 1.94, Min: 1.01'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-2 │ trial-3 │ [1.79, 1.35, 1.14, 1.5, 1.73, 1.06, 1.98, 1.75, 1.07, 1.49]  │ ['Avg:1.49, Median: 1.5, IQR: 0.49, Max: 1.98, Min: 1.06']  │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-2 │ trial-4 │ [1.93, 1.81, 1.18, 1.08, 1.57, 1.85, 1.95, 1.94, 1.58, 1.35] │ ['Avg:1.62, Median: 1.7, IQR: 0.43, Max: 1.95, Min: 1.08']  │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-3 │ trial-0 │ [2.85, 2.87, 2.3, 2.05, 2.86, 2.34, 2.85, 2.3, 2.95, 2.53]   │ ['Avg:2.59, Median: 2.69, IQR: 0.54, Max: 2.95, Min: 2.05'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-3 │ trial-1 │ [2.31, 2.41, 2.34, 2.96, 2.48, 2.68, 2.99, 2.94, 2.01, 2.46] │ ['Avg:2.56, Median: 2.47, IQR: 0.44, Max: 2.99, Min: 2.01'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-3 │ trial-2 │ [2.65, 2.5, 2.68, 2.34, 2.32, 2.61, 2.61, 2.88, 2.86, 2.36]  │ ['Avg:2.58, Median: 2.61, IQR: 0.24, Max: 2.88, Min: 2.32'] │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-3 │ trial-3 │ [2.29, 2.12, 2.4, 2.81, 2.5, 2.54, 2.82, 2.61, 2.45, 2.44]   │ ['Avg:2.5, Median: 2.48, IQR: 0.16, Max: 2.82, Min: 2.12']  │
├──────────┼─────────┼──────────────────────────────────────────────────────────────┼─────────────────────────────────────────────────────────────┤
│ Metric-3 │ trial-4 │ [2.41, 2.12, 2.31, 2.29, 2.46, 2.95, 2.74, 2.66, 2.34, 2.65] │ ['Avg:2.49, Median: 2.44, IQR: 0.33, Max: 2.95, Min: 2.12'] │
╘══════════╧═════════╧══════════════════════════════════════════════════════════════╧═════════════════════════════════════════════════════════════╛
-------------------- Metric Summary --------------------

Auto-Plot in Tikz and Matplotlib format

see more auto-previews in example

Traj Plot matplotlib version

Box Plot matplotlib version

Violin Plot matplotlib version

A12 Plot matplotlib version

Scott-knot Plot matplotlib version

Average Bar Plot matplotlib version

Sum Bar Plot matplotlib version

Real Usage Example in PyABSA

To analyze the impact of max_seq_len, we can use MetricVisualizer as following:

pip install pyabsa  # install pyabsa

import random
import os
from metric_visualizer import MetricVisualizer

from pyabsa.functional import Trainer
from pyabsa.functional import APCConfigManager
from pyabsa.functional import ABSADatasetList
from pyabsa.functional import APCModelList

config = APCConfigManager.get_config()
config.model = APCModelList.FAST_LCF_BERT
config.lcf = 'cdw'
config.seed = [random.randint(0, 10000) for _ in range(3)]  # each trial repeats with different seed

MV = MetricVisualizer()
config.MV = MV

max_seq_lens = [60, 70, 80, 90, 100]

for max_seq_len in max_seq_lens:
    config.max_seq_len = max_seq_len
    dataset = ABSADatasetList.Laptop14
    Trainer(config=config,
            dataset=dataset,  # train set and test set will be automatically detected
            auto_device=True  # automatic choose CUDA or CPU
            )
    config.MV.next_trial()

save_prefix = os.getcwd()
MV.summary(save_path=save_prefix, no_print=True)

MV.traj_plot_by_trial(save_path=save_prefix, xticks=max_seq_lens)
MV.violin_plot_by_trial(save_path=save_prefix, xticks=max_seq_lens)
MV.box_plot_by_trial(save_path=save_prefix, xticks=max_seq_lens)
MV.avg_bar_plot_by_trial(save_path=save_prefix, xticks=max_seq_lens)
MV.sum_bar_plot_by_trial(save_path=save_prefix, xticks=max_seq_lens)
MV.scott_knott_plot(save_path=save_prefix, xticks=max_seq_lens, minorticks_on=False)