Source for extracting .bin files from the commercial MIBI.
Project description
mibi-bin-tools
Toolbox for extracting tiff images from MIBIScope .bin
files.
We suggest using toffy
for more in depth .bin
file extraction which also provides more diagnostic tools and post-extraction processing steps.
Installation:
You can install the package in your own Python environment, or if you'd like we have a Conda environment set up to use.
conda env create -f environment.yml
PyPI
pip install mibi-bin-tools
Source
Open terminal and navigate to where you want the code stored.
Then input the command:
git clone https://github.com/angelolab/mibi-bin-tools.git
cd mibi-bin-tools
pip install .
Development
This project is in early development and we make may make breaking changes and improvements. If you want to update the version on your computer to have the latest changes, perform the following steps.
First pull to get the latest version of mibi-bin-tools
. Then install the package in editable mode with your python environment of choice activated.
git pull
pip install -e .
To run the tests
pytest
Questions?
If that doesn't answer your question, you can open an issue. Before opening, please double-check and see that someone else hasn't opened an issue for your question already.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Hashes for mibi_bin_tools-0.2.12-cp312-cp312-win_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 085a36101a95a0052c5b45085db3588d2de7a28a603ae2317d138ae526530815 |
|
MD5 | adf89974ad9bd6ef7361b183052a93b1 |
|
BLAKE2b-256 | 6887f25b82196a5c0b09f3cd038aa39dde5beab2b127f46820c9c2427df88529 |
Hashes for mibi_bin_tools-0.2.12-cp312-cp312-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | e95daa1cb81901c41f1b4cbe379a6be58f39e4d4142e8d72b71146916c5eed5f |
|
MD5 | 38edd9aa48d6f6abb28ed47d8390e487 |
|
BLAKE2b-256 | dadd43a3619ea8a6abb202f88005e1a35ab5dcef35e7e96d71c98bbbc6a91048 |
Hashes for mibi_bin_tools-0.2.12-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | efa5abb1d2312057185b2bb98cad1dd0fdc94968541374f3e98be5b79357b237 |
|
MD5 | 0400a5e542bc4164d3cc23a57ec572dc |
|
BLAKE2b-256 | b1cd171a65e029d8f6f750fbeb05df1bb24765a56ec35dfad5aab40d6446bd36 |
Hashes for mibi_bin_tools-0.2.12-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8d835546bf10790702448aacfb7f38b3b2fb2068cb28bd4f250105b695f14b5b |
|
MD5 | b901b8d06d22f91ed20fb236e7619aef |
|
BLAKE2b-256 | ee642d6b5a4ac56dfa4d9396ce3ce0a9247483b6e0cfda995787ebd1f858b737 |
Hashes for mibi_bin_tools-0.2.12-cp312-cp312-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | bab373548c20f4b15f862cdf37e11c0d1fe448463911b75a3bc62d8d5bbebd36 |
|
MD5 | e0ad6a387e1a1dd40ce046182e10fe56 |
|
BLAKE2b-256 | de0e7a89ebc1e6d21024729616fe5be5e5b04a55c4f5c3cc22ceed2924d1e755 |
Hashes for mibi_bin_tools-0.2.12-cp312-cp312-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | ba17261ee95cb0e773733a3134265930f411413eb4afaa8fa0758577696a0d81 |
|
MD5 | 85a7a420ca64c8e3404fdfc319063c84 |
|
BLAKE2b-256 | 19c56c357b1f18a130756f00cd36b531bae9760ab4e28335f253e305bdf11fbc |
Hashes for mibi_bin_tools-0.2.12-cp312-cp312-macosx_10_9_universal2.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9062d32e80430aa486e767268b009a943da7d0cc5141f50f92cdd63fa1b24490 |
|
MD5 | a7cafab490cc1d53d3ae206b5bed260d |
|
BLAKE2b-256 | 77673f3ce969d2dc21ac73488154d27f6eb71598d0639f907b2448929f8402bf |
Hashes for mibi_bin_tools-0.2.12-cp311-cp311-win_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 52b03084efc1e00403db38107835e2bc418cee34465fe06552df7ebb045e4e59 |
|
MD5 | d54137ac54b0d9efd89be74fd40f4a39 |
|
BLAKE2b-256 | 33466987d9d77faea772ec52671917aefd4de2e91a8f9cefda955f8bdc770331 |
Hashes for mibi_bin_tools-0.2.12-cp311-cp311-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 617c0f37b3919a5a797d6301019b2c68d5163e90f35ca314fe48aeddbd265353 |
|
MD5 | 04ef602d566e4224db2df98bc8e97244 |
|
BLAKE2b-256 | 76dcc5fe31f8adeb7bf34bf3a639771165c3b460ef29bf58f6ee77b21c01e4bb |
Hashes for mibi_bin_tools-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 84c69d85e6a79ea336f0e0e3561df172d80aa75c2170319f5b63c530bccab383 |
|
MD5 | 9fe22c12c826d350c59130f3a2fa094c |
|
BLAKE2b-256 | d01673c4634da4355df5ac89f3ba054f4c8f042440992199527af407c3fc2fd4 |
Hashes for mibi_bin_tools-0.2.12-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f028737e0839ce73a010c6d5352ac2b1db2605a7d6ce9d9f8f924c71a01c4879 |
|
MD5 | 8c196d39c1588a2090484518cc193899 |
|
BLAKE2b-256 | ca22150855c298cee102bc08180453b520a1af639fbb0275d7a58514cf5b0a60 |
Hashes for mibi_bin_tools-0.2.12-cp311-cp311-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 76c440d663aee985849a160dc1569eb8dfe8de546cb92867e67dd696e03265b3 |
|
MD5 | a51bbf5a07da53332508a88d074cef78 |
|
BLAKE2b-256 | 7470adf14d38ca5546e26b9f37ce0817f214134dc2188dd628f84dbc028ecaee |
Hashes for mibi_bin_tools-0.2.12-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 2f34279de2f70b0d5d2a722f6eb706d9ca3bfc26123582ef7cedd20c49469e04 |
|
MD5 | 71659a33cd55676074d7067d9e485117 |
|
BLAKE2b-256 | d20bc7d0b906f93fc8a26ac5097c52f2ef3056da7a3998eb6690f02169bb010c |
Hashes for mibi_bin_tools-0.2.12-cp311-cp311-macosx_10_9_universal2.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b4985d3713424bbf4820402e51ddc2a5bd9cb3b5b0b88762b2753115d0b9a89d |
|
MD5 | 2f772bcc9ecd5e136b564367c284043c |
|
BLAKE2b-256 | 62786bb3a1adab653b55dc8990e65dea56c454562d9f083cdd035169a9c042ad |
Hashes for mibi_bin_tools-0.2.12-cp310-cp310-win_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8b708c296a2c44d25935341b1f4e5b7b18f949cdd2c8046ee99109306fe98e1f |
|
MD5 | f9a6cb63b1e414ce0b3ab095d78fc39d |
|
BLAKE2b-256 | 9748d1fb0c8e7df87c012f76042359f0a8c38a9bf154fa168752895cbb363dd0 |
Hashes for mibi_bin_tools-0.2.12-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 18180f10cb6d021a6ea2daee8b3134f9a0371068312092e89efe8945b942fa9f |
|
MD5 | 17b1c8deee72f6ee136fe4953f91823a |
|
BLAKE2b-256 | a95a3df994f723ce2597f4f24691b63919dc511e8dfd29aa5d1f9e3144cf517f |
Hashes for mibi_bin_tools-0.2.12-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | bd48af4c9538605aac29f5f7a40e1e9c53bee0ed8120c37f50de6820da8f097e |
|
MD5 | 465fdcd966d478a5e9a1c6fa77f8c1e5 |
|
BLAKE2b-256 | 60911cdc25d9dacddb8e37f84ee7cc4b2b37d8063c49a791fb6b21d5ec05888c |
Hashes for mibi_bin_tools-0.2.12-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 75581ff3b5a3fc5dbaeef6548103123077cf78e3f7f5fe1b2243f61a6b176b0f |
|
MD5 | 9de839879ea8656a547a7b3356f34af9 |
|
BLAKE2b-256 | 54d020fd4e014802905a2864c16de8e996db72e20142b2dc0016f4f33d16d2fc |
Hashes for mibi_bin_tools-0.2.12-cp310-cp310-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | d4bdfe0ca0d28b36debb8aee37b0b0aad72330361e33e2f2a8688675c246106d |
|
MD5 | b6eb0bf4a0a2e28a052f8da6d876853e |
|
BLAKE2b-256 | 05aa26aa7509bc094299319951a5a4ab2d5f7260c606879717e8c1ac3a62c357 |
Hashes for mibi_bin_tools-0.2.12-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 4cf15f29bc602e9040bc6b4083afc7051ead3e8f1a4f319a45f9e512e79004f3 |
|
MD5 | 54de300d273237e6c77e3289f09f17ee |
|
BLAKE2b-256 | a09a79bd891869f246b4a1909fd29391ee422bf5f68c2f0dfdcfe5c23526daa2 |
Hashes for mibi_bin_tools-0.2.12-cp310-cp310-macosx_10_9_universal2.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 1bd5f0bb35a7ceb6f1776dba63a563a07ee1a8fbcb9c4e74d8ae9b054dac9417 |
|
MD5 | fd18723e2ddd92a34c4d3724858d0b0b |
|
BLAKE2b-256 | fb944d0c587dded43a13ca11611fbf41bd7aa1a8e396860624e3558c6f9a222a |
Hashes for mibi_bin_tools-0.2.12-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | ab8a727e4167a40f11a738ce16b10abc3c903dde560d4db8c9ffd9fa083a4143 |
|
MD5 | 55ab701e33c9da1f287233762ee2902a |
|
BLAKE2b-256 | 9681a94ebe33abd908f1cc1cb400a5a9053a297340fde84fc9c5ce31612a2769 |
Hashes for mibi_bin_tools-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 50fc38818962d806b5d3e04fecf95152977689905b6b9fdb2f975afad45057c1 |
|
MD5 | ab6290a2e807dd2e2d4258063a5f049c |
|
BLAKE2b-256 | 1d43de0db0e66f4ec7b150f66b1966021dc669e13f2b318dc5922a4ca4d5eee5 |
Hashes for mibi_bin_tools-0.2.12-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | d2d7113f2c6f7b93dac9543f9e02c2295135397ccd841e0937a4309deb42b55b |
|
MD5 | 73dde8aacc36c49a672dd73b1cb03947 |
|
BLAKE2b-256 | c281facc052cbd38adb3ef4698e11486ca9ff91ad189f5978957366b6aa443e3 |
Hashes for mibi_bin_tools-0.2.12-cp39-cp39-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b0d0e596c81f72820128f7b709a6bca3bc8ab15323cc75eefed6b507264dbe9f |
|
MD5 | 5fd406ba225ce79dea6e1b96393f0c32 |
|
BLAKE2b-256 | 7413938387a868a6f2138e8137df2a06a78e0b1aadffab8c690225a69e82b7e3 |
Hashes for mibi_bin_tools-0.2.12-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 437f77c608cd1afd7a4399824197044362f92d69f32124851bd9f3a212b9fda7 |
|
MD5 | 0fa05b35a42a5e07bd03bf5c6e58980f |
|
BLAKE2b-256 | 38df2eb2581f7a466cc25df7ef6d85cd178ef26b8179f0564ea19851995081c7 |
Hashes for mibi_bin_tools-0.2.12-cp39-cp39-macosx_10_9_universal2.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 5b64b56b32c13e2e43d13a93a36417efb5f6af1e6ff0f445eb3dc761569c5127 |
|
MD5 | 3191c38f93673130b73905bca1938f66 |
|
BLAKE2b-256 | 6387d12741d702f43ba5d9a5eaed0370e7fc3bb5b3c857bfb6a7612d440b4cbf |