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Python package to optimize mutual information between two multiple sequence alignment.

Project description

MIGA is a Python package that provides a MSA (Multiple Sequence Alignment) mutual information genetic algorithm optimizer. It sorts two MSAs in a way that maximize or minimize their mutual information. The genetic algorithm solvers may run on both CPU and Nvidia GPUs.

Code is hosted at GitHub.

License

This software is copyright
  • 2018 Caio Silva Souza and all contributors listed in the file AUTHORS unless stated otherwise in the source files.

MIGA is released under the LGPL software license, version 3 or later.

Contact

Please report bugs and feature requests through the Issues Tracker.

Documentation

Plese refer to the examples folder in the code repository and to online documentation to learn how to use this package.

Instalation

For installation instructions please refer to the project page.

Project details


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