Python package to optimize mutual information between two multiple sequence alignment.
Project description
MIGA is a Python package that provides a MSA (Multiple Sequence Alignment) mutual information genetic algorithm optimizer. It sorts two MSAs in a way that maximize or minimize their mutual information. The genetic algorithm solvers may run on both CPU and Nvidia GPUs.
Code is hosted at GitHub.
License
- This software is copyright
2018 Caio Silva Souza and all contributors listed in the file AUTHORS unless stated otherwise in the source files.
MIGA is released under the LGPL software license, version 3 or later.
Contact
Please report bugs and feature requests through the Issues Tracker.
Documentation
Plese refer to the examples folder in the code repository and to online documentation to learn how to use this package.
Instalation
For installation instructions please refer to the project page.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file miga-1.0.0.tar.gz.
File metadata
- Download URL: miga-1.0.0.tar.gz
- Upload date:
- Size: 531.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.26.0 CPython/3.6.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
bb77937c58c4bcf9b7a0faa5970ca30f178b06f6e103b5251edbac5bff15b369
|
|
| MD5 |
365bc82026ab077bef203f419c2e3f92
|
|
| BLAKE2b-256 |
2b0d010219a57412190da18d22be160103fef588c5c31534e84c1364bf6c5522
|
