modos-schema 0.1.0

Metadata schema for the Multi-Omics Digital Object System

modos-schema

Metadata schema for the SMOC Multi-Omics Digital Object System.

erDiagram
MODOCollection {

}
MODO {
    datetime creation_date  
    datetime last_update_date  
    uri source_uri  
    uriorcurie id  
    string name  
    string description  
}
Assay {
    OmicsTypeList omics_type  
    uriorcurie id  
    string name  
    string description  
}
DataEntity {
    string data_path  
    DataFormat data_format  
    uriorcurie id  
    string name  
    string description  
}
ReferenceGenome {
    string data_path  
    integerList taxon_id  
    uri source_uri  
    string version  
    uriorcurie id  
    string name  
    string description  
}
ReferenceSequence {
    string sequence_md5  
    uri source_uri  
    string version  
    uriorcurie id  
    string name  
    string description  
}
Sample {
    string cell_type  
    string source_material  
    Sex sex  
    integerList taxon_id  
    stringList collector  
    uriorcurie id  
    string name  
    string description  
}

MODOCollection ||--}o MODO : "entries"
MODO ||--}o Assay : "has_assay"
Assay ||--}o Sample : "has_sample"
Assay ||--}o DataEntity : "has_data"
DataEntity ||--}o Sample : "has_sample"
DataEntity ||--|o ReferenceGenome : "has_reference"
ReferenceGenome ||--}o ReferenceSequence : "has_sequence"

Website

https://sdsc-ordes.github.io/modos-schema

Repository Structure

• examples/ - example data
• project/ - project files (do not edit these)
• src/ - source files (edit these)
  • modos_schema
    • schema -- LinkML schema (edit this)
    • datamodel -- generated Python datamodel
• tests/ - Python tests

Developer Documentation

Use the `make` command to generate project artefacts:

• make all: make everything
• make deploy: deploys site

Credits

This project was made with linkml-project-cookiecutter.