mrnaScan
The Python toolkits designed to identify exons and 3'UTR of each reads for bulk/single-cell full-length mRNA-seq
Installation
python3 -m pip install --upgrade mrnaScan
Usage
# Basic usage
mrnaScan [options] -i <input.bam> -r <reference.gtf>
# For more information
mrnaScan -h
Output
- *_exon_info.h5: a hdf5 file include count table of pesudo-transcripts and their exon information
- *_utr_info.tsv: a tab-separated table of 3'utr length of each gene
Features
- The exons and 3'utr of each reads
- The pesudo-transcripts defined via the combination of exons
- The count table of pesudo-transcripts
- Other feature would be supported in the future ...
1 maintainer
Release files for mrnaScan 0.1.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| mrnaScan-0.1.2.tar.gz | 6.5 kB | Details |
Release files / mrnaScan-0.1.2.tar.gz
| Download URL | mrnaScan-0.1.2.tar.gz |
|---|---|
| Size | 6.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
48bee3e6e6b78219b451779f347a300630da447de2036321fb8a10e76f326ea5
|
|
BLAKE2b-256 checksum How to use checksums |
402e2ca7fba903e0431534ca32af97daa6daa8b09e27af1cfacb40227b4fd5e5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.6.1 requests/2.23.0 setuptools/62.1.0 requests-toolbelt/0.9.1 tqdm/4.45.0 CPython/3.7.4
|
