mrnaScan
The Python toolkits designed to identify exons and 3'UTR of each reads for bulk/single-cell full-length mRNA-seq
Installation
python3 -m pip install --upgrade mrnaScan
Usage
# Basic usage
mrnaScan [options] -i <input.bam> -r <reference.gtf>
# For more information
mrnaScan -h
Output
- *_exon_info.h5: a hdf5 file include count table of pesudo-transcripts and their exon information
- *_utr_info.tsv: a tab-separated table of 3'utr length of each gene
Features
- The exons and 3'utr of each reads
- The pesudo-transcripts defined via the combination of exons
- The count table of pesudo-transcripts
- Other feature would be supported in the future ...
1 maintainer
Metadata
1 maintainer
Release files for mrnaScan 0.1.2
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Release files / mrnaScan-0.1.2.tar.gz
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