Skip to main content


Project description

This package will soon be no longer or only very sparsely maintained in favor of deeptime.


What is it?

msmtools is an open source collection of algorithms for the estimation and analysis of discrete state space Markov chains via Markov state models (MSM).

The algorithms are implemented using NumPy and SciPy.


With pip:

pip install msmtools

with conda:

conda install -c conda-forge msmtools

or install latest devel branch with pip:

pip install git+

Support and development

For bug reports/suggestions/complains please file an issue on GitHub.

Or start a discussion on our mailing list:

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

msmtools-1.2.6.tar.gz (603.9 kB view hashes)

Uploaded source

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page