NDEx Python utilities. Includes file conversion and importing functions
Project description
# ndex-python-utilities
In addition to python, these utilities require some additional modules.
To install these modules, type the following commands:
`shell pip install requests pip install requests-toolbelt pip install ndex `
Utility Scripts:
In all scripts that have arguments username and password, these will be the username and password for the NDEx account that you are using.
upload-to-ndex.py
`shell python upload-to-ndex.py <username> <password> <directory> `
Where <i>directory</i> contains all of the network files you want to upload.
create_network_from_tsv.py
`shell python create_network_from_tsv.py <username> <password> <ndex server> <tsv file> <import plan file> <network name> <network description> ` change_network_descriptions.py
change_network_versions.py
make_networks_public.py
make_networks_private.py
delete_all_networks.py
get_user_account_statistics.py
download_pc_pathways.py
`shell download_pc_pathways.py <datasource> <format> `
