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Genbank file parser.

Project Description

Usage:

>>> import nebgb
>>> rec = nebgb.parse_file("./test/data/simple-1.gb").next()
>>> rec.locus["name"]
'NP_034640'
>>> rec.locus["length"]
182
>>> rec.keywords["source"]["name"]
'house mouse'
>>> rec.features[1]["properties"]["product"]
'interferon beta, fibroblast'
>>> for seq in rec.seqiter:
...    print seq
mnnrwilhaafllcfsttalsinykqlqlqertnirkcqelleqlngkinltyradfkip
memtekmqksytafaiqemlqnvflvfrnnfsstgwnetivvrlldelhqqtvflktvle
ekqeerltwemsstalhlksyywrvqrylklmkynsyawmvvraeifrnfliirrltrnf
qn

Alternatively you can use nebgb.parse() to parse a string or iterator that yields lines of a Genbank file.

Release History

Release History

This version
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0.1.2

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0.1.1

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0.1.0

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0.0.4

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0.0.3

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0.0.2

History Node

0.0.1

Download Files

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
nebgb-0.1.2.tar.gz (304.8 kB) Copy SHA256 Checksum SHA256 Source Jul 31, 2009

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