nestml-server 1.0.0b1

A server instance for NESTML

NESTML Server

Install

Install NEST Simulator into home folder because of non-root permission to write files into nest install directory.

wget https://github.com/nest/nest-simulator/archive/refs/heads/master.zip -O /tmp/nest-simulator-master.zip
unzip /tmp/nest-simulator-master.zip -d /tmp/
rm -rf /tmp/nest-build/; mkdir -p /tmp/nest-build; cd /tmp/nest-build
cmake -DCMAKE_INSTALL_PREFIX:PATH=$HOME/opt/nest-nestml /tmp/nest-simulator-master
make -j $(nproc)
make install

Singularity

Use singularity or install all requirements in host.

Build Singularity images with all requirements for NESTML and server

sudo singularity build nestml-server.sif singularity/nest-server.def

Use Singularity for NESTML Server and Jupyter notebook

singularity shell nestml-server.sif

Usage

Source config variables of NEST to load path and pythonpath.

source $HOME/opt/nest-nestml/bin/nest_vars.sh

A. Start NESTML Server

gunicorn nestml_server:app --bind 0.0.0.0:52426 --timeout 120

B. Start Jupyter notebook

User can send code to NESTML server to build and install NESTML models.

cd notebook
jupyter notebook