NucFlag misassembly identifier.
Project description
NucFlag
Fork of NucFreq. Script for making nucleotide frequency plots and marking misassemblies.
Input
- BAM file of PacBio HiFi reads to an assembly.
- (Optional) BED file of regions.
Output
- BED file of misassemblies.
- Plot with coverage of 1st and 2nd most common bases and misassemblies flagged.
Documentation
Read the docs at the NucFlag wiki for more information.
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