A library for creating and manipulating RNA and DNA sequences
Project description
nucleopy
Scientific Python library to easily work with nucleotide data. Users can create DNA and RNA objects and easily manipulate them
for use in scientific programming.
Author
Rohan Koodli
To Use
pip install nucleopy
See the examples folder for example use cases for nucleopy.
Creating a nucleotide object
r = RNA('AGGCUUUACA')
d = DNA('ATCGGATCCG')
Functions
d.complement() # TAGCCTAGGC
d.isComplement('TAAGCG') # False
r.toDNA() # AGGCTTTACA
RNA-specific functions (requires ViennaRNA installation)
r.Viennafold()
r.ViennaTargetEnergy('(((....)))')
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