ond_visualization

A simple tool to visualize the IBL Dataset using the ONE API

Contributions

Gerrit Fischer: Brain, Playback, Info, Background, Timeline, ActorTemplate
Duc Cuong Tommy Tran: Timeline Data, Timeline, Skip Functions, Sync Functions
Maximilian Wojak: Library for Data Access

Important information

This software has been developed and tested on Windows systems.
At the moment only a few tests have been done on Linux and MacOS with mixed results.
We highly recommend using a Windows system.
Also Python 3.12 is currently not working because of different dependencies.
We recommend Python 3.11

How to use

1. Install pip package

pip install ond-visualization

2. Run example code

import ond_visualization as ond

session = ond.createSess(Roi="SI")
renderer = ond.Renderer(session)
renderer.startRender()

Alternative

Clone the whole repository and run the main.py file.
For that pip install brainrender has to be run first

Known errors

ImportError: DLL load failed while importing _cext: This error can be resolved by installing another package pip install msvc-runtime

Citations

Brainrender:
Claudi, F., Tyson, A., Petrucco, L., Margrie, T. W., Portugues, R., & Branco, T. (2021). Visualizing anatomically registered data with brainrender. eLife, 10. https://doi.org/10.7554/eLife.65751
SimpleSessionEx:
Wojak, M. https://github.com/Blumenfreund1337/SimpleSessionEx
Vedo:
https://github.com/marcomusy/vedo