openECCI 0.1.0

An open source python package for guiding Electron Channelling Contrast Imaging (ECCI)in Scanning Electron Microscopes (SEM).

OpenECCI [open-e-ki] is a Python library for Electron Channelling Contrast Imaging (ECCI) analysis of crystal defects in Scanning Electron Microscope (SEM) by guiding precise stereo-tilt of the specimen to the preferable orientations.

Deployment
Activity	Work in progress
Citation
License

Documentation

Refer to the included Jupyter notebook tutorials for detailed instruction and applications. Demo datasets can be downloaded from openECCI-data repository. The openECCI documentation page is currently under development. Stay tuned for more information. More code examples, and a detailed workflow tutorial paper will be updated soon.

Installation

Create a new conda environment

conda update conda
conda create -n openecci python=3.10 
conda activate openecci

Install openECCI with pip:

pip install openECCI

or you can install from source:

git clone https://github.com/IMBalENce/openECCI
cd openECCI
pip install .

If you want to create an editable install:

pip install -e .

Citing openECCI

If you are using openECCI in your scientific research, please help our scientific visibility by citing the Zenodo DOI: https://doi.org/10.5281/zenodo.11183730.

Contributors

Zhou Xu	Monash Centre for Electron Microscopy (MCEM)
HÃ¥kon Wiik Ã…nes	Norwegian University of Science and Technology Xnovo Technology Aps
Sergey Gorelick	Monash Centre for Electron Microscopy (MCEM) Ramaciotti Centre for Cryo-Electron Microscopy
Xiya Fang	Monash Centre for Electron Microscopy (MCEM)
Peter Miller	Monash Centre for Electron Microscopy (MCEM)