OpenECCI [open-e-ki] is a Python library for Electron Channelling Contrast Imaging (ECCI) analysis of crystal defects in Scanning Electron Microscope (SEM) by guiding precise stereo-tilt of the specimen to the preferable orientations.
| Deployment |  |
|---|---|
| Activity | Work in progress |
| Citation |  |
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Documentation
Refer to the included Jupyter notebook tutorials for detailed instruction and applications. Demo datasets can be downloaded from openECCI-data repository. The openECCI documentation page is currently under development. Stay tuned for more information. More code examples, and a detailed workflow tutorial paper will be updated soon.
Installation
Create a new conda environment
conda update conda
conda create -n openecci python=3.10
conda activate openecci
Install openECCI with pip:
pip install openECCI
or you can install from source:
git clone https://github.com/IMBalENce/openECCI
cd openECCI
pip install .
If you want to create an editable install:
pip install -e .
Citing openECCI
If you are using openECCI in your scientific research, please help our scientific visibility by citing the Zenodo DOI: https://doi.org/10.5281/zenodo.11183730.
Contributors
| Zhou Xu | Monash Centre for Electron Microscopy (MCEM) |
| HÃ¥kon Wiik Ã…nes | Norwegian University of Science and Technology Xnovo Technology Aps |
| Sergey Gorelick | Monash Centre for Electron Microscopy (MCEM) Ramaciotti Centre for Cryo-Electron Microscopy |
| Xiya Fang | Monash Centre for Electron Microscopy (MCEM) |
| Peter Miller | Monash Centre for Electron Microscopy (MCEM) |
1 maintainer
Metadata
1 maintainer
Release files for openECCI 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| openECCI-0.1.0.tar.gz | 40.9 kB | Without provenance | Details for openECCI-0.1.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| openECCI-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for openECCI-0.1.0-py3-none-any.whl |
Total release size: 85.8 kB
Release files / openECCI-0.1.0.tar.gz
| Download URL | openECCI-0.1.0.tar.gz |
|---|---|
| Size | 40.9 kB |
| Tags | Source |
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Release files / openECCI-0.1.0-py3-none-any.whl
| Download URL | openECCI-0.1.0-py3-none-any.whl |
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| Size | 45.0 kB |
| Tags | Python 3 |
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