ORC-Omics

Welcome to ORCO: Ollivier-Ricci curvature for omic data analysis. Details about the tool and implementation are found at [insert biorxiv link].

How to install

ORCO can be installe via pip: pip install orcomics

Example 1: This illustrates ORCO on nodal values using a toy 6-node network
Example 2: This illustrates ORCO on a 90 node network incoporating edges from the Human Protein Reference Database and RNA-seq data from the MMRF CoMMpass dataset.

For any issues, please feel free to contact Anish (aksimhal [at] gmail) or open an issue.

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution for orcomics 0.1.2
File	Size	Uploaded
orcomics-0.1.2.tar.gz	26.4 kB	Oct 4, 2024	Details

Table of built distributions (wheels) for orcomics 0.1.2
File	Interpreter	ABI	Platform	Reset
orcomics-0.1.2-py3-none-any.whl 26.8 kB Oct 4, 2024	Python 3	none	any	Details

Total release size: 53.2 kB

Download URL	orcomics-0.1.2.tar.gz
Size	26.4 kB
Tags	Source
SHA-256 checksum How to use checksums	`e77b2a02ba2792775e31637b6ddc524d99ad9e816a9730641490df3bdb4cb6e5`
BLAKE2b-256 checksum How to use checksums	`6452ce2297e36461362cb254c5149c298ed6deb6a9e7c22df788f6740262f406`
Upload date	Oct 4, 2024
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/5.1.1 CPython/3.9.16`

Download URL	orcomics-0.1.2-py3-none-any.whl
Size	26.8 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`1ed376509ce57b4741af402488034a98256a91bce74e854648ff98b9ceb08117`
BLAKE2b-256 checksum How to use checksums	`728bbade0303c87100b324b9e320861ea8432208b0e47591f273e4305f15d308`
Upload date	Oct 4, 2024
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/5.1.1 CPython/3.9.16`