Ollivier-Ricci curvature for -omic network analysis
Project description
ORC-Omics
Welcome to ORCO: Ollivier-Ricci curvature for omic data analysis. Details about the tool and implementation are found at [insert biorxiv link].
How to install
ORCO can be installe via pip: pip install orcomics
Examples (jupyter notebook)
- Example 1: This illustrates ORCO on nodal values using a toy 6-node network
- Example 2: This illustrates ORCO on a 90 node network incoporating edges from the Human Protein Reference Database and RNA-seq data from the MMRF CoMMpass dataset.
Issues
For any issues, please feel free to contact Anish (aksimhal [at] gmail) or open an issue.
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