Ollivier-Ricci curvature for -omic network analysis

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  • License: GNU General Public License v3 or later (GPLv3+)
  • Author: Anish Simhal
  • Requires: Python >=3.8
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Project description

ORC-Omics

Welcome to ORCO: Ollivier-Ricci curvature for omic data analysis. Details about the tool and implementation are found at [insert biorxiv link].

How to install

ORCO can be installe via pip: pip install orcomics

Examples (jupyter notebook)

  • Example 1: This illustrates ORCO on nodal values using a toy 6-node network
  • Example 2: This illustrates ORCO on a 90 node network incoporating edges from the Human Protein Reference Database and RNA-seq data from the MMRF CoMMpass dataset.

Issues

For any issues, please feel free to contact Anish (aksimhal [at] gmail) or open an issue.

Project details

Verified details

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Avatar for aksimhal from gravatar.com aksimhal

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  • License: GNU General Public License v3 or later (GPLv3+)
  • Author: Anish Simhal
  • Requires: Python >=3.8
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