Patch Drive Simulator (PaDS)
This program simulates gene drive spreading in a population of organisms over a patch-based landscape. The user specifies population, drive, and system parameters in a .yaml file. Upon completion, a .yaml file is returned containing the target population size after a user-defined number of generations.
The program can be installed directly via GitHub or on the command line as follows:
- Navigate to the location of patch_drive_simulator.py
- To install using pip, type:
py run_patch_drive.py -i input_file.yaml -o output_file.yaml
on a Windows machine and
python3 run_patch_drive.py -i input_file.yaml -o output_file.yaml
on macOS/Unix.
Important note: Line 4 in run_patch_drive.py must be changed to point to the modules located on the user's systems. Future versions will correct for this. See the corresponding final report for more information on this.
Citation:
PaDS (2022). Cole Butler, v. 1.0.0. GitHub: https://github.com/cbutler112358/course-projects-w2022.
1 maintainer
Release files for Patch-Drive-Simulator-cbutler112358 0.0.1
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Source distribution (sdist)
| File | Size | Uploaded | |
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| Patch-Drive-Simulator-cbutler112358-0.0.1.tar.gz | 2.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| Patch_Drive_Simulator_cbutler112358-0.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 5.4 kB
Release files / Patch-Drive-Simulator-cbutler112358-0.0.1.tar.gz
| Download URL | Patch-Drive-Simulator-cbutler112358-0.0.1.tar.gz |
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| Size | 2.6 kB |
| Tags | Source |
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twine/3.8.0 pkginfo/1.8.2 readme-renderer/34.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.9 tqdm/4.63.0 importlib-metadata/4.11.3 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.1
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Release files / Patch_Drive_Simulator_cbutler112358-0.0.1-py3-none-any.whl
| Download URL | Patch_Drive_Simulator_cbutler112358-0.0.1-py3-none-any.whl |
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| Size | 2.8 kB |
| Tags | Python 3 |
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twine/3.8.0 pkginfo/1.8.2 readme-renderer/34.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.9 tqdm/4.63.0 importlib-metadata/4.11.3 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.1
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