A spatially explicit, patch-based gene drive simulator.
Project description
Patch Drive Simulator (PaDS)
This program simulates gene drive spreading in a population of organisms over a patch-based landscape. The user specifies population, drive, and system parameters in a .yaml file. Upon completion, a .yaml file is returned containing the target population size after a user-defined number of generations.
The program can be installed directly via GitHub or on the command line as follows:
- Navigate to the location of patch_drive_simulator.py
- To install using pip, type:
py run_patch_drive.py -i input_file.yaml -o output_file.yaml
on a Windows machine and
python3 run_patch_drive.py -i input_file.yaml -o output_file.yaml
on macOS/Unix.
Important note: Line 4 in run_patch_drive.py must be changed to point to the modules located on the user's systems. Future versions will correct for this. See the corresponding final report for more information on this.
Citation:
PaDS (2022). Cole Butler, v. 1.0.0. GitHub: https://github.com/cbutler112358/course-projects-w2022.
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