Probabilistic cell typing for spatial transcriptomics
Project description
pciSeq: Probabilistic Cell typing by In situ Sequencing
A Python package that implements the cell calling algorithm as described in [Qian, X., et al. Nature Methods (2020)]
Installation
pip install pciSeq
Demo
You can run a pciSeq demo in google colab:
References
[1] Qian, X., et al. (2020). Probabilistic cell typing enables fine mapping of closely related cell types in situ. Nat Methods 17, 101 – 106.
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