Skip to main content

PerturbMerge is a Python package that predicts the impact of 485 specific gene knockouts on cell viability by analyzing single-cell transcriptomic data. It integrates single-cell transcriptomic sequencing data from 164 undisturbed cancer cell lines, along with corresponding essential gene screening information, and is trained using three ensemble learning algorithms: Random Forest (RF), Gradient Boosting Machine (GBM), and XGBoost. This results in a comprehensive classifier capable of predicting the effects of specific gene knockouts on the survival and proliferation of single cells based on the input data.

Release files for perturbmerge 1.0.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for perturbmerge 1.0.0
File Size Uploaded
perturbmerge-1.0.0.tar.gz 3.9 kB Details

Release files / perturbmerge-1.0.0.tar.gz

Download URL perturbmerge-1.0.0.tar.gz
Size 3.9 kB
Tags Source
SHA-256 checksum
How to use checksums
effa138cedbf658fa0218a3e11488107473a850b620378d6417430ee4b6e8cb7
BLAKE2b-256 checksum
How to use checksums
84350e024d1b2fc4720e84d794cc478fa0b182483dcd0831ce150ceb425e2f0a
Upload date
Uploaded using Trusted Publishing?
What is trusted publishing?
No
Uploaded via twine/3.8.0 pkginfo/1.10.0 readme-renderer/34.0 requests/2.27.1 requests-toolbelt/1.0.0 urllib3/1.26.18 tqdm/4.64.1 importlib-metadata/4.8.3 keyring/23.4.1 rfc3986/1.5.0 colorama/0.4.5 CPython/3.6.8

Release history Release notifications | RSS feed

This release

1.0.0 This release

1 release file

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page