PerturbMerge is a Python package that predicts the impact of 485 specific gene knockouts on cell viability by analyzing single-cell transcriptomic data. It integrates single-cell transcriptomic sequencing data from 164 undisturbed cancer cell lines, along with corresponding essential gene screening information, and is trained using three ensemble learning algorithms: Random Forest (RF), Gradient Boosting Machine (GBM), and XGBoost. This results in a comprehensive classifier capable of predicting the effects of specific gene knockouts on the survival and proliferation of single cells based on the input data.
Release files for perturbmerge 1.0.0
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Source distribution (sdist)
| File | Size | Uploaded | |
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| perturbmerge-1.0.0.tar.gz | 3.9 kB | Details |
Release files / perturbmerge-1.0.0.tar.gz
| Download URL | perturbmerge-1.0.0.tar.gz |
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| Size | 3.9 kB |
| Tags | Source |
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twine/3.8.0 pkginfo/1.10.0 readme-renderer/34.0 requests/2.27.1 requests-toolbelt/1.0.0 urllib3/1.26.18 tqdm/4.64.1 importlib-metadata/4.8.3 keyring/23.4.1 rfc3986/1.5.0 colorama/0.4.5 CPython/3.6.8
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