pgscatalog.core
This Python package contains:
- CLI applications to download scoring files from the PGS Catalog and normalise them into a consistent structure
- core library classes and functions for working with PGS data
| Application | Description | Link |
|---|---|---|
pgscatalog-download |
Download scoring files from the PGS Catalog in specific genome builds | README |
pgscatalog-combine |
Combine multiple scoring files into a consistent structure | README |
pgscatalog-relabel |
Relabel values in a column based on values in a column in another file | README |
If you want to write Python code to work with PGS data, the library may be helpful for you.
If you want to do automatic PGS calculation check out the PGS Catalog Calculator, which uses these tools internally.
Installation
or install via pip:
$ pipx install pgscatalog.core
Documentation
Documentation is available at https://pygscatalog.readthedocs.io/.
Developer instructions
You'll need nox and uv installed.
To get set up with a development environment run:
$ nox -s dev
$ source .venv/bin/activate
This will create a virtual environment in the current directory.
$ pgscatalog-download --help
nox can also be used to run tests and lint the package:
$ nox
Release files for pgscatalog.core 1.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pgscatalog_core-1.1.1.tar.gz | 1.6 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pgscatalog_core-1.1.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 1.7 MB
Release files / pgscatalog_core-1.1.1.tar.gz
| Download URL | pgscatalog_core-1.1.1.tar.gz |
|---|---|
| Size | 1.6 MB |
| Tags | Source |
|
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Transparency logRelease files / pgscatalog_core-1.1.1-py3-none-any.whl
| Download URL | pgscatalog_core-1.1.1-py3-none-any.whl |
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| Size | 49.2 kB |
| Tags | Python 3 |
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Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
|
Provenance
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