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Core tools for working with polygenic scores (PGS) and the PGS Catalog

Project description

pgscatalog-core

Run pytest on pgscatalog.core Documentation Status

This Python package contains:

  • CLI applications to download scoring files from the PGS Catalog and normalise them into a consistent structure
  • core library classes and functions for working with PGS data
Application Description Link
pgscatalog-download Download scoring files from the PGS Catalog in specific genome builds README
pgscatalog-combine Combine multiple scoring files into a consistent structure README
pgscatalog-relabel Relabel values in a column based on values in a column in another file README

If you want to write Python code to work with PGS data, the library may be helpful for you.

If you want to do automatic PGS calculation check out the PGS Catalog Calculator, which uses these tools internally.

Installation

$ pipx install pgscatalog-core

Documentation

Documentation is available at https://pygscatalog.readthedocs.io/.

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