pgscatalog.match
This Python package contains:
- CLI applications to match variants from PGS Catalog scoring files against
plinkvariant information files and output files ready forplink2 --score - core library classes and functions for matching variants and creating plink scoring files
If you want to write Python code to match genetic variants, the library may be helpful for you.
If you want to do automatic PGS calculation check out the PGS Catalog Calculator, which uses these tools internally.
Installation
or install via pip:
$ pipx install pgscatalog.match
Documentation
Documentation is available at https://pygscatalog.readthedocs.io/.
Developer instructions
You'll need nox and uv installed.
To get set up with a development environment run:
$ nox -s dev
$ source .venv/bin/activate
This will create a virtual environment in the current directory.
$ pgscatalog-match --help
nox can also be used to run tests and lint the package:
$ nox
Release files for pgscatalog.match 0.4.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pgscatalog_match-0.4.0.tar.gz | 822.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pgscatalog_match-0.4.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 868.9 kB
Release files / pgscatalog_match-0.4.0.tar.gz
| Download URL | pgscatalog_match-0.4.0.tar.gz |
|---|---|
| Size | 822.2 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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| Size | 46.7 kB |
| Tags | Python 3 |
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Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Provenance
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