Libraries and applications for working with calculated polygenic scores
Project description
pgscatalog.calc
This Python package contains:
- CLI applications to aggregate and adjust calculated PGS in the context of genetic ancestry similarity
- library classes and functions for working with calculated PGS and PCA data
| Application | Description | Link |
|---|---|---|
pgscatalog-aggregate |
Aggregate calculated PGS split across multiple files | README |
pgscatalog-ancestry-adjust |
Adjust calculated PGS in the context of genetic ancestry | README |
If you want to write Python code to work with PGS data, the library may be helpful for you.
Please note this package doesn't contain functionality to calculate a PGS from target genomes and scoring files. Instead, it's focused on aggregation and normalisation. If you want to do automatic PGS calculation check out the PGS Catalog Calculator, which uses these tools internally.
Installation
or install via pip:
$ pipx install pgscatalog.calc
Documentation
Documentation is available at https://pygscatalog.readthedocs.io/.
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