pheval_semphen
semsimian + phenio.db for phenopacket disease prioritization
Example of how to run using pheval
- Download http://data.monarchinitiative.org/monarch-kg/latest/phenio.db.gz
- Edit config file located in test_configs so that the path_to_phenio references the path to the file we just downloaded
- pheval run -i test_configs/ -t path/to/phenopackets/ -r "semphenphevalrunner" -o test_output/
Example of how to run just using python executable
- Download http://data.monarchinitiative.org/monarch-kg/latest/phenio.db.gz
- python src/pheval_semphen/semphen.py -i path/to/phenopacket(s) -o path/to/results/directory -p path/to/phenio.db file
Acknowledgements
This cookiecutter project was developed from the monarch-project-template template and will be kept up-to-date using cruft.
1 maintainer
Metadata
1 maintainer
Release files for pheval-semphen 0.0.0
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| File | Size | Uploaded | Provenance | Actions |
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| pheval_semphen-0.0.0-py3-none-any.whl | Python 3 | none | any | Details for pheval_semphen-0.0.0-py3-none-any.whl |
Total release size: 13.5 kB
Release files / pheval_semphen-0.0.0.tar.gz
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| Tags | Python 3 |
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