Vision Physiology Software
Project description
Vision Physiology Software
Code for experimental setups and analysis pipelines to study cellular and network physiology in visual cortical circuits
The software is organized into several modules to perform the acquisition, the preprocessing, the visualization and the analysis of multimodal recordings (see Documentation below).
Software screenshot
Install
Simply:
pip install physion
For an installation on an acquisition setup
conda env create -n acquisition -f acquisition_environment.yml
Modules and documentation
The different modules of the software are documented in the following links:
- Visual stimulation -- relying on PsychoPy
- Performing multimodal recordings
- Intrinsic Imaging
- Electrophysiology
- Calcium imaging -- pipeline based on Suite2P
- Pupil tracking
- Behavioral monitoring
- Assembling pipeline
- Hardware control
- Visualization -- relying on the excellent PyQtGraph
- Analysis
Troubleshooting / Issues
Use the dedicated Issues interface of Github.
Project details
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physion-0.1.0.tar.gz
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physion-0.1.0-py3-none-any.whl
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