a stochastic simulation of gene expression within site-specific translation rates
Project description
# pinetree [](https://travis-ci.org/benjaminjack/pinetree) [](http://pinetree.readthedocs.io/en/latest/?badge=latest)
A flexible gene expression simulator with codon-specific translation rates.
## Requirements
Pinetree requires Python, CMake, and a modern C++ compiler. Python 3 is recommended.
## Installation
To install the latest stable version of pinetree from PyPI, run the following:
` pip install pinetree `
The latest development build may be installed from GitHub as follows:
` git clone https://github.com/benjaminjack/pinetree.git pinetree/setup.py install `
## Documentation
Full documentation is available [here](http://pinetree.readthedocs.io/).
You may also build the documentation from the source code. Building the documentation requires sphinx.
` pinetree/setup.py build_sphinx `
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