plOTme: A little set of scripts for visualising Orbitrap data
A few Python scripts designed to aid in the plotting of MS2 and associated HPLC data obtained on an Orbitrap. After initial data processing in FreeStyle, export your data in CSV format, load things into the relevant script, and let Python take care of the rest.
General-purpose scripts
FLASC: Full mass spectrometry plots. Feed a folder with your CSVs into the script, and it'll plot up all your data into individual MS1 spectra.
FLEX: Full extracted ion chromatograms. Feed a folder with your CSVs into the script, and it'll plot up all your data into individual EICs.
Scripts for studying changing injection volumes
SINCH: Studying injection volumes by chromatogram comparison. Designed for plotting chromatograms on the same set of axes where the independent factor is the injection volume (i.e. runtime is the same across all samples). By default, reads the first 5 CSV files in a user-specified folder and assigns them to 1, 2, 5, 10 and 20 μL (can be changed in the script).
SINTA: Studying injection volumes by tandem mass spectrometry. Coming soon.
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Release files for plOTme-for-Orbitrap 0.0.1
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| plotme_for_orbitrap-0.0.1-py3-none-any.whl | Python 3 | none | any | Details for plotme_for_orbitrap-0.0.1-py3-none-any.whl |
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